INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ336020	Aeromonas phage pAh6.2TG	51780	52.484	Aeromonas	Group I	Phayathaivirus	Phayathaivirus	Nefertitivirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas hydrophila BT09	High-quality	High-quality	98.380	AAI-based (high-confidence)	Phayathaivirus	Phayathaivirus pAh62TG	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MZ342906	Escherichia phage vB_EcoP_SU7	76626	42.054	Escherichia	Group I	Suseptimavirus	Suseptimavirus	Gordonclarkvirinae	Mtkvariviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterotoxigenic Escherichia coli serovar O:139	Complete	High-quality	100.000	DTR (high-confidence)	Suseptimavirus	Suseptimavirus SU7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ343158	Mycobacterium phage RitSun	55975	60.815	Mycobacterium	Group I	Avanivirus	Avanivirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.550	AAI-based (high-confidence)	Avanivirus	Avanivirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_51;antirepressor orf_55
MZ345003	Xanthomonas phage M29	42891	59.644	Xanthomonas	Group I	Foxunavirus	Foxunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Xanthomonas campestris pv. campestris	High-quality	High-quality	97.640	AAI-based (high-confidence)	Foxunavirus	Foxunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ348421	Kosakonia phage Kc283	76232	48.272	Kosakonia	Group I	Cbunavirus	Cbunavirus	Waldeevirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Kosakonia cowanii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cbunavirus	Cbunavirus Kc283	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ348422	Kosakonia phage Kc263	253740	45.455	Kosakonia	Group I	Branisovskavirus	Branisovskavirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Kosakonia cowanii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Branisovskavirus	Branisovskavirus Kc263	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_209
MZ348423	Kosakonia phage 305	174783	40.019	Kosakonia	Group I	Kanagawavirus	Kanagawavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Kosakonia cowanii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kanagawavirus	Kanagawavirus threeohfive	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ348424	Kosakonia phage Kc304	171207	38.819	Kosakonia	Group I	Winklervirus	Winklervirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Kosakonia cowanii	High-quality	High-quality	98.930	AAI-based (high-confidence)	Winklervirus	Winklervirus chi14	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ348425	Pseudomonas phage psageB2	50739	58.507	Pseudomonas	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Readingvirus	Readingvirus PSA1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_17
MZ348426	Pseudomonas phage psageK4	98440	47.751	Pseudomonas	Group I	Otagovirus	Otagovirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Otagovirus	Otagovirus psagek4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic