INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ156569	Salmonella phage SM86	43508	49.492	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ156570	Salmonella phage Liang dang 541	157697	44.492	Salmonella	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	99.770	AAI-based (high-confidence)	Kuttervirus	Kuttervirus BSP101	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ170040	Escherichia phage vB_EcoM_FJ1	170053	35.444	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ170041	Escherichia phage vB_EcoM_FN	168411	35.356	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus effone	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ171369	Methanoculleus virus Blf4	37078	63.108	Methanoculleus	Group I	Flagovirus	Flagovirus	Unclassified	Pungoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Methanoculleus bourgensis E02.3	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MZ171370	Gordonia phage Roney	59907	51.044	Gordonia	Group I	Tanisvirus	Tanisvirus	Deejayvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.880	AAI-based (high-confidence)	Tanisvirus	Tanisvirus tanis	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ171371	Gordonia phage Sahara	45072	66.678	Gordonia	Group I	Attisvirus	Attisvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.550	AAI-based (high-confidence)	Attisvirus	Attisvirus sahara	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_35;immunity orf_41
MZ171372	Gordonia phage Madi	66439	59.525	Gordonia	Group I	Terapinvirus	Terapinvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.390	AAI-based (high-confidence)	Terapinvirus	Terapinvirus terapin	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ171377	Mycobacterium phage Jolene	42305	66.692	Mycobacterium	Group I	Liefievirus	Liefievirus	Gclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.350	AAI-based (high-confidence)	Liefievirus	Liefievirus liefie	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_32;immunity orf_33
MZ171378	Mycobacterium phage Eradicator	55730	61.324	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.790	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_37;antirepressor orf_38