INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW618650	Marinomonas phage MfV	10075	46.015	Marinomonas	Unclassified	Corycianvirus	Corycianvirus	Unclassified	Parnassusviridae	Vinavirales	Belvinaviricetes	Produgelaviricota	Abadenavirae	Varidnaviria	Marinomonas	High-quality	High-quality	100.000	AAI-based (high-confidence)	Corycianvirus	Corycianvirus MfV	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW623430	Enterococcus phage MDA1	18058	32.960	Enterococcus	Group I	Copernicusvirus	Copernicusvirus	Sarlesvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecium	High-quality	High-quality	98.520	AAI-based (high-confidence)	Copernicusvirus	Copernicusvirus mda1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW627293	Staphylococcus phage B_UFSM3	42835	34.126	Staphylococcus	Group I	Peeveelvirus	Peeveelvirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_24;cro orf_28;antirepressor orf_33
MW627366	Pseudomonas phage phiGM22-3	42662	58.654	Pseudomonas	Group I	Tunggulvirus	Tunggulvirus	Unclassified	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens strain 22	Complete	High-quality	100.000	DTR (high-confidence)	Tunggulvirus	Tunggulvirus GM223	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_15;antirepressor orf_35
MW629017	Enterobacter phage PF-CE2	178248	44.762	Enterobacter	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW630115	Escherichia phage vB_EcoP-ZQ2	72231	42.849	Escherichia	Group I	Gamaleyavirus	Gamaleyavirus	Enquatrovirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gamaleyavirus	Gamaleyavirus Zq2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW630116	Escherichia phage vB_EcoM-ZQ3	170042	37.606	Escherichia	Group I	Mosigvirus	Mosigvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mosigvirus	Mosigvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW633168	Enterococcus phage MDA2	140226	35.844	Enterococcus	Group I	Kochikohdavirus	Kochikohdavirus	Brockvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kochikohdavirus	Kochikohdavirus mda2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW650841	Staphylococcus phage B_UFSM1	41971	33.988	Staphylococcus	Group I	Peeveelvirus	Peeveelvirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus SBP 01/19 Gaivota PE	High-quality	High-quality	99.060	AAI-based (high-confidence)	Peeveelvirus	Peeveelvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_27;cro orf_32;integrase orf_36
MW650886	Escherichia phage vB_EcoM-ZQ1	149115	49.051	Escherichia	Group I	Aglimvirinae	Unclassified	Aglimvirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	94.390	AAI-based (high-confidence)	Agtrevirus	Agtrevirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic