INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW296865	Salmonella phage SP3_SHan-2021	88041	38.848	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica QH	High-quality	High-quality	99.990	AAI-based (high-confidence)	Felixounavirus	Felixounavirus Sp3Shan2021	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW296877	Klebsiella phage Kpn-11mx	38774	50.812	Klebsiella	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae Nox11	Complete	High-quality	100.000	DTR (high-confidence)	Teetrevirus	Teetrevirus Kpn11mx	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW311372	Salmonella phage SEP1	85703	38.986	Salmonella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica QH	High-quality	High-quality	97.360	AAI-based (high-confidence)	Felixounavirus	Felixounavirus SEP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW314138	Bacteroides phage vB_BfraS_NCTC	47160	38.827	Bacteroides	Group I	Gotuavirus	Gotuavirus	Cardingvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacteroides fragilis NCTC	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gotuavirus	Gotuavirus NCTC	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_27
MW314845	Mycobacterium phage TelAviv	71455	65.434	Mycobacterium	Group I	Corndogvirus	Corndogvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.240	AAI-based (high-confidence)	Corndogvirus	Corndogvirus catdawg	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW314846	Mycobacterium phage KashFlow	111628	61.021	Mycobacterium	Group I	Omegavirus	Omegavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_75
MW314847	Gordonia phage Delrey21	61476	67.423	Gordonia	Group I	Zitchvirus	Zitchvirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Zitchvirus	Zitchvirus verity	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW314848	Arthrobacter phage Kittykat	43603	60.686	Arthrobacter	Group I	Korravirus	Korravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	99.740	AAI-based (high-confidence)	Korravirus	Korravirus kittykat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW314849	Gordonia phage Dexdert	55006	67.504	Gordonia	Group I	Dexdertvirus	Dexdertvirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.340	AAI-based (high-confidence)	Dexdertvirus	Dexdertvirus dexdert	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW314850	Gordonia phage Lilbeanie	59210	67.715	Gordonia	Group I	Lilbeanievirus	Lilbeanievirus	Unclassified	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lilbeanievirus	Lilbeanievirus lilbeanie	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic