INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW247144	Helicobacter phage COL 5-PUJ	26486	37.699	Helicobacter	Group I	Schmidvirus	Schmidvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Helicobacter pylori	High-quality	High-quality	92.650	AAI-based (high-confidence)	Schmidvirus	Schmidvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;antirepressor orf_29
MW247145	Helicobacter phage COL 6-PUJ	26487	37.698	Helicobacter	Group I	Schmidvirus	Schmidvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Helicobacter pylori	High-quality	High-quality	92.650	AAI-based (high-confidence)	Schmidvirus	Schmidvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;antirepressor orf_29
MW247147	Helicobacter phage COL 23-PUJ	28622	37.293	Helicobacter	Group I	Schmidvirus	Schmidvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Helicobacter pylori	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_3;antirepressor orf_29
MW248466	Staphylococcus phage MarsHill	266637	25.178	Staphylococcus	Group I	Madawaskavirus	Madawaskavirus	Wallmarkvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Madawaskavirus	Madawaskavirus marshill	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW250275	Kosakonia virus Kc261	42432	55.475	Kosakonia	Group I	Bonnellvirus	Bonnellvirus	Stentvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Kosakonia cowanii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bonnellvirus	Bonnellvirus Kc261	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW250276	Kosakonia virus Kc318	41938	55.470	Kosakonia	Group I	Cronosvirus	Cronosvirus	Melnykvirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Kosakonia cowanii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cronosvirus	Cronosvirus Kc318	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW250641	Vibrio phage vB_VpP_DE17	43394	49.235	Vibrio	Group I	Maculvirus	Maculvirus	Unclassified	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus O4-12	Complete	High-quality	100.000	DTR (high-confidence)	Maculvirus	Maculvirus DE17	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW250785	Escherichia phage UPEC03	178307	44.557	Escherichia	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW250786	Escherichia phage UPEC06	143140	41.224	Escherichia	Group I	Vequintavirinae	Unclassified	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (high-confidence)	Septuagintavirus	Septuagintavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW250787	Escherichia phage UPEC07	170004	40.313	Escherichia	Group I	Gaprivervirus	Gaprivervirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (high-confidence)	Gaprivervirus	Gaprivervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic