INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW013503 | Salmonella phage L cII-101 | 40664 | 47.514 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica enterica sv Typhimurium LT2 | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus ST64T | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_18;integrase orf_34;antirepressor orf_42 |
| MW015080 | Synechococcus phage S-SRP01 | 45017 | 48.868 | Synechococcus | Group I | Nerivirus | Nerivirus | Sechaudvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. KCZYR4S1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Nerivirus | Nerivirus SSRP01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_15 |
| MW015081 | Synechococcus phage S-SRM01 | 240842 | 35.642 | Synechococcus | Group I | Serangoonvirus | Serangoonvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. KCZYC6 | Complete | High-quality | 100.000 | DTR (high-confidence) | Serangoonvirus | Serangoonvirus essarone | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW021748 | Citrobacter phage vB_CfrD_ZerotoHero | 49802 | 42.850 | Citrobacter | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundiii | High-quality | High-quality | 98.720 | AAI-based (high-confidence) | Tlsvirus | Tlsvirus blueshaddow | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_80 |
| MW021749 | Citrobacter phage vB_Cfr_Xman | 178331 | 43.174 | Citrobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pseudotevenvirus | Pseudotevenvirus miller | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW021750 | Citrobacter phage vB_CfrD_Supreme284 | 49439 | 42.851 | Citrobacter | Group I | Tlsvirus | Tlsvirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 98.080 | AAI-based (high-confidence) | Tlsvirus | Tlsvirus mishy | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_78 |
| MW021751 | Cronobacter phage vB_CsaM_Cronuts | 177882 | 44.540 | Cronobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | Pseudotevenvirus | Pseudotevenvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW021752 | Klebsiella phage vB_KpnM_BovinicusUrsus | 166829 | 39.587 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.820 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus jd18 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW021753 | Salmonella phage AR2819 | 156899 | 44.968 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium LT2 | High-quality | High-quality | 99.280 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW021754 | Salmonella phage FrontPhageNews | 157832 | 44.612 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium | High-quality | High-quality | 99.860 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |