INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT863727	Campylobacter phage F370	132742	26.206	Campylobacter	Group I	Fletchervirus	Fletchervirus	Unclassified	Connertonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Campylobacter jejuni NCTC12662	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fletchervirus	Fletchervirus F372	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT863728	Campylobacter phage F371	132743	26.206	Campylobacter	Group I	Fletchervirus	Fletchervirus	Unclassified	Connertonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Campylobacter jejuni NCTC12662	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fletchervirus	Fletchervirus F372	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT863729	Campylobacter phage F372	131465	26.272	Campylobacter	Group I	Fletchervirus	Fletchervirus	Unclassified	Connertonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Campylobacter jejuni NCTC12662	High-quality	High-quality	99.130	AAI-based (high-confidence)	Fletchervirus	Fletchervirus F372	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT863730	Campylobacter phage F374	131642	26.204	Campylobacter	Group I	Fletchervirus	Fletchervirus	Unclassified	Connertonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Campylobacter jejuni NCTC12662	High-quality	High-quality	99.260	AAI-based (high-confidence)	Fletchervirus	Fletchervirus CJLB7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT863731	Campylobacter phage F375	131645	26.202	Campylobacter	Group I	Fletchervirus	Fletchervirus	Unclassified	Connertonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Campylobacter jejuni NCTC12662	High-quality	High-quality	99.270	AAI-based (high-confidence)	Fletchervirus	Fletchervirus CJLB7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT872956	Stenotrophomonas phage phiSHP3	37611	65.305	Stenotrophomonas	Group I	Luojiashanvirus	Luojiashanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia c31	High-quality	High-quality	96.580	AAI-based (medium-confidence)	Luojiashanvirus	Luojiashanvirus phiSHP3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT880870	Staphylococcus phage PhiSepi-HH1	34053	28.435	Staphylococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis HD21-2	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_1;cro orf_3
MT880871	Staphylococcus phage PI-Sepi-HH2	36164	29.314	Staphylococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis HD21-2	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_46
MT880872	Staphylococcus phage PhiSepi-HH3	147057	30.811	Staphylococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis HD21-2	Complete	High-quality	100.000	Provirus (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_82;integrase orf_90;integrase orf_103;integrase orf_119;integrase orf_121;integrase orf_140
MT884006	Escherichia phage vb_EcoM_bov9_1	166363	35.402	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	98.970	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic