INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT711979	Streptomyces phage Endor2	48829	65.080	Streptomyces	Group I	Camvirus	Camvirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces coelicolor M600	High-quality	High-quality	98.010	AAI-based (high-confidence)	Camvirus	Camvirus endor2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_30;integrase orf_50
MT713136	Aeromonas phage AP1	254490	40.333	Aeromonas	Group I	Ceceduovirus	Ceceduovirus	Emmerichvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas hydrophila	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ceceduovirus	Ceceduovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT720689	Vibrio phage XM1	37633	42.096	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio rotiferianus	High-quality	High-quality	97.120	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MT723932	Mycobacterium phage Schnauzer	43700	66.256	Mycobacterium	Group I	Charlievirus	Charlievirus	Nclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Charlievirus	Charlievirus Pipsqueaks	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36;immunity orf_37
MT723933	Streptomyces phage Keanu	82100	66.755	Streptomyces	Group I	Hiyaavirus	Hiyaavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces lividans JI 1326	High-quality	High-quality	99.880	AAI-based (high-confidence)	Hiyaavirus	Hiyaavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_87
MT723934	Gordonia phage Love	60042	67.268	Gordonia	Group I	Vividuovirus	Vividuovirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vividuovirus	Vividuovirus love	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT723935	Gordonia phage Azula	53622	67.092	Gordonia	Group I	Jujuvirus	Jujuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jujuvirus	Jujuvirus azula	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;immunity orf_41;cro orf_44;antirepressor orf_46
MT723936	Gordonia phage Hitter	47297	67.362	Gordonia	Group I	Jujuvirus	Jujuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	93.330	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_40
MT723937	Gordonia phage JKSyngboy	58176	67.985	Gordonia	Group I	Kroosvirus	Kroosvirus	Schenleyvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.010	AAI-based (high-confidence)	Kroosvirus	Kroosvirus jksyngboy	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT723938	Gordonia phage Bunnybear	51268	66.933	Gordonia	Group I	Nymphadoravirus	Nymphadoravirus	Nymbaxtervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	97.890	AAI-based (high-confidence)	Nymphadoravirus	Nymphadoravirus bunnybear	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_31;integrase orf_32;immunity orf_36;antirepressor orf_40