INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT708547	Klebsiella phage Muenster	346937	31.865	Klebsiella	Group I	Alcyoneusvirus	Alcyoneusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Alcyoneusvirus	Alcyoneusvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT708548	Streptomyces phage Salutena	51956	67.501	Streptomyces	Group I	Salutenavirus	Salutenavirus	Arquatrovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Salutenavirus	Salutenavirus salutena	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_24;integrase orf_46
MT708549	Burkholderia phage Maja	68393	54.503	Burkholderia	Group I	Gladiolivirus	Gladiolivirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia gladioli	High-quality	High-quality	97.810	AAI-based (high-confidence)	Gladiolivirus	Gladiolivirus maja	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT708550	Achromobacter phage Mano	42452	64.303	Achromobacter	Group I	Manovirus	Manovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Achromobacter sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Manovirus	Manovirus Mano	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT710307	Salmonella phage pSal-SNUABM-04	239626	51.209	Salmonella	Group I	Machinavirus	Machinavirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica Sal-SNUABM-svn1	High-quality	High-quality	99.060	AAI-based (high-confidence)	Machinavirus	Machinavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT711370	Methanocaldococcus fervens tailed virus 1	31202	33.280	Methanocaldococcus	Group I	Deepoceanvirus	Deepoceanvirus	Unclassified	Fervensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Methanocaldococcus fervens	Low-quality	Genome-fragment	34.370	HMM-based (lower-bound)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_3
MT711523	Escherichia phage vB_EcoS_fFiEco02	44723	50.869	Escherichia	Group I	Kagunavirus	Kagunavirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kagunavirus	Kagunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT711524	Escherichia phage vB_EcoS_fFiEco03	43947	50.488	Escherichia	Group I	Kagunavirus	Kagunavirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kagunavirus	Kagunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT711525	Escherichia phage vB_EcoS_fKuEco01	40825	50.957	Escherichia	Group I	Kagunavirus	Kagunavirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	94.270	AAI-based (high-confidence)	Kagunavirus	Kagunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT711526	Escherichia phage vB_EcoS_fPoEco01	44391	50.657	Escherichia	Group I	Kagunavirus	Kagunavirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kagunavirus	Kagunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic