INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT684600	Streptomyces phage TieDye	55031	59.516	Streptomyces	Group I	Rimavirus	Rimavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptomyces griseus ATCC 10137	High-quality	High-quality	98.320	AAI-based (high-confidence)	Rimavirus	Rimavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT684601	Mycobacterium phage Hlubikazi	55471	61.439	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.330	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus hlubikazi	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;immunity orf_39;cro orf_40
MT684602	Mycobacterium phage Rope	71003	56.038	Mycobacterium	Group I	Papyrusvirus	Papyrusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.960	AAI-based (high-confidence)	Papyrusvirus	Papyrusvirus papyrus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT700412	Bacillus phage 1_ICo-2020	51227	41.790	Bacillus	Group I	Suttonboningtonvirus	Suttonboningtonvirus	Unclassified	Ehrlichviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Suttonboningtonvirus	Suttonboningtonvirus sv1ICo2020	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT701586	Burkholderia phage Mica	43707	62.153	Burkholderia	Group I	Micavirus	Micavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia cenocepacia	High-quality	High-quality	99.370	AAI-based (high-confidence)	Micavirus	Micavirus Mica	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_27
MT701587	Burkholderia phage Magia	44942	65.062	Burkholderia	Group I	Magiavirus	Magiavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia cenocepacia	High-quality	High-quality	100.000	AAI-based (high-confidence)	Magiavirus	Magiavirus magia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_36
MT701588	Klebsiella phage Metamorpho	171475	38.512	Klebsiella	Group I	Jiaodavirus	Jiaodavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella aerogenes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jiaodavirus	Jiaodavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT701589	Klebsiella phage Pone	44346	53.847	Klebsiella	Group I	Drulisvirus	Drulisvirus	Slopekvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Drulisvirus	Drulisvirus Pone	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT701590	Klebsiella phage Miami	253383	43.947	Klebsiella	Group I	Miamivirus	Miamivirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Miamivirus	Miamivirus miami	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT701591	Burkholderia phage Mana	38038	64.315	Burkholderia	Group I	Aptresvirus	Aptresvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Burkholderia gladioli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aptresvirus	Aptresvirus mana	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_44