INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT522003	Microbacterium phage Rie18	56435	63.886	Microbacterium	Group I	Krampusvirus	Krampusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Krampusvirus	Krampusvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT522004	Mycobacterium phage Gail	53702	62.387	Mycobacterium	Group I	Luchadorvirus	Luchadorvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Luchadorvirus	Luchadorvirus gail	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	parA orf_37;immunity orf_74
MT522005	Mycobacterium phage Misfit	76169	63.055	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kostyavirus	Kostyavirus CJW1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_53;immunity orf_56
MT522006	Gordonia phage BBQValindra	46875	67.334	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bowservirus	Bowservirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_35;integrase orf_37
MT522007	Gordonia phage Epsocamisio	52314	62.010	Gordonia	Group I	Soupsvirus	Soupsvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.850	AAI-based (high-confidence)	Soupsvirus	Soupsvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_31;immunity orf_72
MT526905	Yersinia phage PYps14T	166935	35.362	Yersinia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	99.300	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT533174	Escherichia phage CJ20	169884	40.439	Escherichia	Group I	Gaprivervirus	Gaprivervirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (high-confidence)	Gaprivervirus	Gaprivervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT536174	Stenotrophomonas phage vB_SmaS-AXL_3	47545	63.348	Stenotrophomonas	Group I	Axeltriavirus	Axeltriavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Stenotrophomonas maltophilia D1585	High-quality	High-quality	99.790	AAI-based (high-confidence)	Axeltriavirus	Axeltriavirus AXL3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT542512	Escherichia phage PhiV-1	39461	48.686	Escherichia	Group I	Berlinvirus	Berlinvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12	High-quality	High-quality	98.760	AAI-based (high-confidence)	Berlinvirus	Berlinvirus V1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT542697	Klebsiella phage P509	40954	53.206	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae KP30	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus P509	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic