INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT354569 | Pseudomonas phage phiK7B1 | 112269 | 56.468 | Pseudomonas | Group I | Nickievirus | Nickievirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nickievirus | Nickievirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT354570 | Pseudomonas phage phiB1_1 | 41714 | 56.626 | Pseudomonas | Group I | Torinorumvirus | Torinorumvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas savastanoi pv. phaseolicola | Complete | High-quality | 100.000 | DTR (high-confidence) | Torinorumvirus | Torinorumvirus B11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT360680 | Klebsiella virus 2019KP1 | 43925 | 54.035 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT360681 | Shigella phage 2019SD1 | 53145 | 44.512 | Shigella | Group I | Hanrivervirus | Hanrivervirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella dysenteriae type 1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hanrivervirus | Hanrivervirus hv2019SD1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT360682 | Vibrio phage Vc1 | 49833 | 45.313 | Vibrio | Group I | Jhansiroadvirus | Jhansiroadvirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae | High-quality | High-quality | 96.230 | AAI-based (high-confidence) | Jhansiroadvirus | Jhansiroadvirus gwaliVC1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT361768 | Ralstonia phage RPZH6 | 64657 | 64.844 | Ralstonia | Group I | Gervaisevirus | Gervaisevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gervaisevirus | Gervaisevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT361972 | Acinetobacter phage Ab11510-phi | 50916 | 38.864 | Acinetobacter | Group I | Olaviavirus | Olaviavirus | Unclassified | Buchnerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii Ab11510 | Complete | High-quality | 100.000 | DTR (high-confidence) | Olaviavirus | Olaviavirus Ab11510phi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_41;integrase orf_55 |
| MT362618 | Microcystis phage MaeS | 79995 | 37.055 | Microcystis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microcystis aeruginosa FACHB-942 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT366568 | Staphylococcus phage R4 | 45168 | 33.287 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus ha-010/19 | High-quality | High-quality | 97.300 | AAI-based (high-confidence) | Triavirus | Triavirus SAP11 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27;integrase orf_61 |
| MT366580 | Vibrio phage HY01 | 41772 | 47.446 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio campbellii HY01 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |