INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT254578 | Bacillus phage Izhevsk | 168638 | 34.319 | Bacillus | Group I | Tsamsavirus | Tsamsavirus | Joanripponvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus VKM B-370 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tsamsavirus | Tsamsavirus izhevsk | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_11 |
| MT259468 | Aeromonas phage PS | 41209 | 48.560 | Aeromonas | Group I | Savitribaivirus | Savitribaivirus | Unclassified | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas salmonicida A567 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Savitribaivirus | Savitribaivirus PS | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT261384 | Salmonella virus PAT1 | 41328 | 50.269 | Salmonella | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Heidelberg | Complete | High-quality | 100.000 | DTR (high-confidence) | Uetakevirus | Uetakevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_4;integrase orf_11 |
| MT263719 | Acinetobacter virus vB_AbaP_AGC01 | 41231 | 39.485 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | Friunavirus | Friunavirus AGC01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT270409 | Phaeobacter phage MD18 | 149262 | 58.311 | Phaeobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Phaeobacter inhibens DSM 17395 | High-quality | High-quality | 99.910 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT276994 | Aeromonas phage AhyVDH1 | 39175 | 58.047 | Aeromonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila 4572 | Medium-quality | Genome-fragment | 85.480 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT303952 | Streptococcus phage phi29862 | 54735 | 39.163 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pyogenes MGAS29862 serotype emm4 | High-quality | High-quality | 99.840 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MT310850 | Gordonia phage Secretariat | 57731 | 52.816 | Gordonia | Group I | Secretariatvirus | Secretariatvirus | Deejayvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 95.370 | AAI-based (high-confidence) | Secretariatvirus | Secretariatvirus secretariat | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_74 |
| MT310851 | Microbacterium phage Sedgewig | 41505 | 63.438 | Microbacterium | Group I | Ilzatvirus | Ilzatvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ilzatvirus | Ilzatvirus ilzat | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT310852 | Streptomyces phage ClubPenguin | 56205 | 59.046 | Streptomyces | Group I | Bingvirus | Bingvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces mirabilis NRRL B-2400 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |