INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT215167	Vibrio phage JSF37	38451	42.738	Vibrio	Group I	Chatterjeevirus	Chatterjeevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio cholerae O1	Complete	High-quality	100.000	DTR (high-confidence)	Chatterjeevirus	Chatterjeevirus ICP3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT225100	Escherichia phage Lys8385Vzw	50953	51.553	Escherichia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O103:H11	High-quality	High-quality	96.820	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_26;antirepressor orf_65
MT225101	Escherichia phage Lys19259Vzw	61072	49.203	Escherichia	Group I	Traversvirus	Traversvirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	Complete	High-quality	100.000	DTR (high-confidence)	Traversvirus	Traversvirus P27	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1;antirepressor orf_8;cro orf_32;cro orf_33;antirepressor orf_44;antirepressor orf_58
MT226657	Staphylococcus phage SAM2	137617	30.422	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT227924	Vibrio phage phiV208	45521	43.160	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_53
MT227925	Vibrio phage phiV141	43313	48.170	Vibrio	Group I	Fujianvirus	Fujianvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fujianvirus	Fujianvirus V141	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT230534	Pantoea phage vB_PagM_SSEM1	54982	44.182	Pantoea	Group I	Loessnervirus	Loessnervirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pantoea agglomerans strain SER	High-quality	High-quality	100.000	AAI-based (high-confidence)	Loessnervirus	Loessnervirus SSEM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT233524	Salmonella phage vB_Sen_I1	112111	38.993	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica	High-quality	High-quality	99.150	AAI-based (high-confidence)	Tequintavirus	Tequintavirus tvI1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT234338	Agrobacterium phage OLIVR1	75576	45.389	Agrobacterium	Group I	Oliverunavirus	Oliverunavirus	Unclassified	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizogenic Agrobacterium biovar 1 ST15.13/040	High-quality	High-quality	100.000	AAI-based (high-confidence)	Oliverunavirus	Oliverunavirus OLIVR1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT234339	Agrobacterium phage OLIVR2	75576	45.381	Agrobacterium	Group I	Oliverunavirus	Oliverunavirus	Unclassified	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizogenic Agrobacterium biovar 1 ST15.13/040	High-quality	High-quality	100.000	AAI-based (high-confidence)	Oliverunavirus	Oliverunavirus OLIVR1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic