INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT114164	Mycobacterium phage Veteran	56147	61.499	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.540	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus veteran	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_40;immunity orf_42;antirepressor orf_44
MT114165	Mycobacterium phage BadStone	75679	63.053	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.400	AAI-based (high-confidence)	Kostyavirus	Kostyavirus toto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_50;immunity orf_53
MT114166	Microbacterium phage Nike	62393	66.663	Microbacterium	Group I	Squashvirus	Squashvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	Complete	High-quality	100.000	DTR (high-confidence)	Squashvirus	Squashvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT114167	Mycobacterium phage Phanphagia	59699	61.550	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus shauna1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_33;integrase orf_35;immunity orf_37
MT118288	Pseudomonas phage Epa4	45439	52.499	Pseudomonas	Group I	Bruynoghevirus	Bruynoghevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bruynoghevirus	Bruynoghevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT118289	Pseudomonas phage Epa7	65629	55.457	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	Complete	High-quality	100.000	DTR (high-confidence)	Pbunavirus	Pbunavirus Epa7	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT118290	Pseudomonas phage Epa10	66774	55.697	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	Complete	High-quality	100.000	DTR (high-confidence)	Pbunavirus	Pbunavirus E215	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT118291	Pseudomonas phage Epa12	66520	55.666	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	Complete	High-quality	100.000	DTR (high-confidence)	Pbunavirus	Pbunavirus DP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT118292	Pseudomonas phage Epa13	65680	55.504	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	Complete	High-quality	100.000	DTR (high-confidence)	Pbunavirus	Pbunavirus BrSP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT118293	Pseudomonas phage Epa14	65797	55.282	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas sp.	Complete	High-quality	100.000	DTR (high-confidence)	Pbunavirus	Pbunavirus Epa14	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic