INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT006238 | Bifidobacterium phage BadAztec4 | 19802 | 48.889 | Bifidobacterium | Group I | Badaztecvirus | Badaztecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bifidobacterium asteroides | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | Badaztecvirus | Badaztecvirus badaztec1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT006239 | Bifidobacterium phage BadAztec2 | 18689 | 48.729 | Bifidobacterium | Group I | Badaztecvirus | Badaztecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bifidobacterium asteroides | Complete | High-quality | 100.000 | ITR (high-confidence) | Badaztecvirus | Badaztecvirus badaztec1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT006240 | Bifidobacterium phage BadAargau2 | 18899 | 50.426 | Bifidobacterium | Group I | Badaztecvirus | Badaztecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bifidobacterium asteroides | Complete | High-quality | 100.000 | ITR (high-confidence) | Badaztecvirus | Badaztecvirus badaargau2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT012302 | Salmonella phage PT1 | 40586 | 55.406 | Salmonella | Group I | Jilinvirus | Jilinvirus | Iiscvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Cerro 87 | High-quality | High-quality | 96.330 | AAI-based (high-confidence) | Jilinvirus | Jilinvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_12 |
| MT012729 | Salmonella phage vB_SenTO17 | 41658 | 50.780 | Salmonella | Group I | Cornellvirus | Cornellvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 98.070 | AAI-based (high-confidence) | Cornellvirus | Cornellvirus SenTO17 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT012730 | Salmonella phage vB_SenM-1 | 52471 | 45.995 | Salmonella | Group I | Rosemountvirus | Rosemountvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 99.290 | AAI-based (high-confidence) | Rosemountvirus | Rosemountvirus SE13 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT013111 | Staphylococcus phage SA75 | 43134 | 34.437 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus SA75 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_30;antirepressor orf_36;integrase orf_63 |
| MT023084 | Citrobacter phage IME-JL8 | 49838 | 47.963 | Citrobacter | Group I | Sertoctavirus | Sertoctavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF8 | Complete | High-quality | 100.000 | DTR (high-confidence) | Sertoctavirus | Sertoctavirus SRT8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT024859 | Gordonia phage DumpsterDude | 52018 | 66.610 | Gordonia | Group I | Ruthyvirus | Ruthyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Ruthyvirus | Ruthyvirus dumpsterdude | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_40;immunity orf_45 |
| MT024860 | Microbacterium phage Stromboli | 41594 | 68.801 | Microbacterium | Group I | Dismasvirus | Dismasvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 99.850 | AAI-based (high-confidence) | Dismasvirus | Dismasvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |