INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN945901 | Mycobacterium phage Ximenita | 61027 | 66.741 | Mycobacterium | Group I | Unicornvirus | Unicornvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Unicornvirus | Unicornvirus ximenita | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_43;immunity orf_46;cro orf_47 |
| MN945902 | Rhodococcus phage Dinger | 46617 | 58.803 | Rhodococcus | Group I | Rerduovirus | Rerduovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodococcus erythropolis RIA 643 | High-quality | High-quality | 99.050 | AAI-based (high-confidence) | Rerduovirus | Rerduovirus takoda | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;immunity orf_50 |
| MN945903 | Mycobacterium phage Jiminy | 68777 | 66.423 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.990 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus oline | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN945904 | Mycobacterium phage Eponine | 58678 | 67.419 | Mycobacterium | Group I | Fionnbharthvirus | Fionnbharthvirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Fionnbharthvirus | Fionnbharthvirus eponine | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_46;immunity orf_48;cro orf_49 |
| MN945905 | Gordonia phage John316 | 77221 | 58.977 | Gordonia | Group I | Montyvirus | Montyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Montyvirus | Montyvirus john316 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN953776 | Salmonella phage Chennai | 157462 | 44.587 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhi | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus PM10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN954399 | Vibrio phage VPT02 | 120547 | 39.894 | Vibrio | Group I | Vipunavirus | Vipunavirus | Ermolyevavirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus ATCC 33844 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vipunavirus | Vipunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MN956514 | Salmonella phage L6jm | 118452 | 39.249 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Choleraesuis ATCC 13312 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus L6jm | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MN956515 | Vibrio phage V039C | 43405 | 42.954 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio alginolyticus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_58 |
| MN958086 | Vibrio phage Bennett | 126552 | 40.098 | Vibrio | Group I | Thalassavirus | Thalassavirus | Ermolyevavirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio harveyi BAA-1116 | Complete | High-quality | 100.000 | DTR (high-confidence) | Thalassavirus | Thalassavirus bennett | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |