INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN904510 | Staphylococcus phage vB_SauS-SAP27 | 43444 | 34.946 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus RN4220 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phietavirus | Phietavirus SAP27 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_10;antirepressor orf_38;cro orf_41;cro orf_42;integrase orf_45 |
| MN905160 | Pseudomonas phage PE09 | 99455 | 48.141 | Pseudomonas | Group I | Otagovirus | Otagovirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Otagovirus | Otagovirus PE09 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN906996 | Pseudomonas phage LY218 | 73083 | 54.873 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa ATCC 27853 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Litunavirus | Litunavirus Ab09 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN908683 | Mycobacterium phage StressBall | 47915 | 67.282 | Mycobacterium | Group I | Fishburnevirus | Fishburnevirus | Pclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.810 | AAI-based (high-confidence) | Fishburnevirus | Fishburnevirus kilkor | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_32;antirepressor orf_35 |
| MN908684 | Arthrobacter phage Shoya | 37783 | 63.722 | Arthrobacter | Group I | Shoyavirus | Shoyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter globiformis NRRL B-2979 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Shoyavirus | Shoyavirus shoya | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31 |
| MN908685 | Microbacterium phage PauloDiaboli | 191968 | 60.088 | Microbacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN908686 | Microbacterium phage Zepp | 40189 | 63.590 | Microbacterium | Group I | Neferthenavirus | Neferthenavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 SEA | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MN908687 | Gordonia phage Skog | 152435 | 65.764 | Gordonia | Group I | Skogvirus | Skogvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skogvirus | Skogvirus Skog | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN908688 | Mycobacterium phage Cornie | 56391 | 61.386 | Mycobacterium | Group I | Cornievirus | Cornievirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cornievirus | Cornievirus cornie | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_38 |
| MN908689 | Arthrobacter phage DrSierra | 42622 | 66.466 | Arthrobacter | Group I | Manhattanvirus | Manhattanvirus | Unclassified | Casidaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter atrocyaneus NRRL B-2883 | High-quality | High-quality | 98.390 | AAI-based (high-confidence) | Manhattanvirus | Manhattanvirus drsierra | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_8;integrase orf_48 |