INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MN602268	Bacteriophage DSS3_MAL1	149582	59.589	Unspecified	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_62;integrase orf_101
MN602881	Erwinia phage Midgardsormr38	50485	50.859	Erwinia	Group I	Midgardsormrvirus	Midgardsormrvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Erwinia persicina	High-quality	High-quality	100.000	AAI-based (high-confidence)	Midgardsormrvirus	Midgardsormrvirus midgardsormr38	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_18;integrase orf_34;cro orf_55
MN604053	Escherichia phage E21	58536	46.898	Escherichia	Group I	Lavrentievavirus	Lavrentievavirus	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	enterotoxigenic Escherichia coli	High-quality	High-quality	98.260	AAI-based (high-confidence)	Lavrentievavirus	Lavrentievavirus E21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN604230	Bacillus phage vB_BcM_Sam112	45037	41.621	Bacillus	Group I	Prospektnaukivirus	Prospektnaukivirus	Unclassified	Trautnerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus	High-quality	High-quality	99.580	AAI-based (high-confidence)	Prospektnaukivirus	Prospektnaukivirus sam112	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MN604238	Acinetobacter phage vB_AbaP_APK44	41461	39.070	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii NIPH70	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus APK44	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN604239	Acinetobacter phage vB_AbaP_APK87	42402	39.055	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii LUH5547	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus APK87	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN604407	Salmonella phage ST3	85180	43.805	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kolesnikvirus	Kolesnikvirus Ea214	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN604698	Bacillus phage vB_BcM_Sam46	45419	41.650	Bacillus	Group I	Samaravirus	Samaravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Samaravirus	Samaravirus sam46	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MN605466	Erysiphe necator associated levi-like virus 1	3638	50.550	Unspecified	Group IV	Fiersviridae	Unclassified	Unclassified	Fiersviridae	Norzivirales	Leviviricetes	Lenarviricota	Orthornavirae	Riboviria	Erysiphe necator	High-quality	High-quality	94.550	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	unknown
MN614471	Acinetobacter phage vB_AbaP_APK48-3	41196	39.227	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii APEX-294	Complete	High-quality	100.000	DTR (high-confidence)	Friunavirus	Friunavirus APK483	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic