INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN161573 | Salmonella phage HT105/1 int-201 | 41725 | 47.065 | Salmonella | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lederbergvirus | Lederbergvirus P22 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_18;antirepressor orf_19;integrase orf_23;integrase orf_39;cro orf_45;antirepressor orf_62;integrase orf_65 |
| MN163280 | Klebsiella phage KpGranit | 122710 | 45.216 | Klebsiella | Group I | Sugarlandvirus | Sugarlandvirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sugarlandvirus | Sugarlandvirus KpGranit | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN163281 | Klebsiella phage KpCHEMY26 | 70678 | 41.716 | Klebsiella | Group I | Pylasvirus | Pylasvirus | Humphriesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Pylasvirus | Pylasvirus KpCHEMY26 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN164484 | Escherichia virus ECH1 | 46054 | 43.558 | Escherichia | Group I | Guelphvirus | Guelphvirus | Braunvirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Guelphvirus | Guelphvirus ACGM12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MN166083 | Acinetobacter phage Abp9 | 44820 | 37.691 | Acinetobacter | Group I | Sichuanvirus | Sichuanvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.590 | AAI-based (high-confidence) | Sichuanvirus | Sichuanvirus Abp9 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MN166823 | Klebsiella phage ST512-KPC3phi13.5 | 25624 | 51.998 | Klebsiella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ST512-KPC3 | Medium-quality | Genome-fragment | 64.140 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | cro orf_25;integrase orf_40 |
| MN172529 | Listeria phage LP-039 | 136234 | 35.914 | Listeria | Group I | Pecentumvirus | Pecentumvirus | Jasinskavirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Listeria monocytogenes MACK | Complete | High-quality | 100.000 | DTR (high-confidence) | Pecentumvirus | Pecentumvirus LP048 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN175603 | Microbacterium phage Tyrumbra | 53975 | 68.663 | Microbacterium | Group I | Metamorphoovirus | Metamorphoovirus | Unclassified | Hodgkinviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium paraoxydans NRRL B-14843 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Metamorphoovirus | Metamorphoovirus tyrumba | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN175604 | Gordonia phage PhorbesPhlower | 41486 | 65.080 | Gordonia | Group I | Luckytenvirus | Luckytenvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 98.720 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_31;antirepressor orf_41 |
| MN175679 | Vibrio phage vB_VpS_BA3 | 58648 | 46.300 | Vibrio | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus O1-1 | Medium-quality | Genome-fragment | 55.730 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |