INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN101225 | Klebsiella phage KMI11 | 98975 | 39.667 | Klebsiella | Group I | Tevenvirinae | Unclassified | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca; Klebsiella penumoniae | Medium-quality | Genome-fragment | 58.460 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN101227 | Klebsiella phage KPN3 | 38503 | 52.500 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 95.990 | AAI-based (high-confidence) | Przondovirus | Przondovirus KPN3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN101228 | Klebsiella phage KPN4 | 108916 | 45.584 | Klebsiella | Group I | Sugarlandvirus | Sugarlandvirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca; Klebsiella penumoniae | High-quality | High-quality | 95.460 | AAI-based (high-confidence) | Sugarlandvirus | Sugarlandvirus KPN4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN101229 | Klebsiella phage KMI13 | 158756 | 39.644 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca; Klebsiella penumoniae | High-quality | High-quality | 94.000 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN101230 | Klebsiella phage KPN6 | 164270 | 39.548 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca; Klebsiella penumoniae | High-quality | High-quality | 97.270 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN102098 | Aeromonas phage D3 | 262372 | 47.521 | Aeromonas | Group I | Ludhianavirus | Ludhianavirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas hydrophila | Complete | High-quality | 100.000 | DTR (high-confidence) | Ludhianavirus | Ludhianavirus D3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN102376 | Vibrio phage vB_VpS_CA8 | 58480 | 46.423 | Vibrio | Group I | Queuovirinae | Unclassified | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus O3-11 | Medium-quality | Genome-fragment | 55.340 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN103401 | Bordetella phage vB_BbrS_PHB09 | 42129 | 62.790 | Bordetella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bordetella bronchiseptica Bb01 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN103533 | Mycobacterium phage Weirdo19 | 52581 | 70.195 | Mycobacterium | Group I | Rosariovirus | Rosariovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Rosariovirus | Rosariovirus Weirdo19ES | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_43 |
| MN103542 | Enterococcus phage vB_EfaS_EF1c55 | 55876 | 39.783 | Enterococcus | Group I | Saphexavirus | Saphexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 97.590 | AAI-based (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |