INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MN023189	Brevibacterium phage AGM14	36678	60.840	Brevibacterium	Group I	Agmunavirus	Agmunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Brevibacterium aurantiacum SMQ-1335	High-quality	High-quality	100.000	AAI-based (high-confidence)	Agmunavirus	Agmunavirus AGM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN023190	Brevibacterium phage AGM15	36825	60.861	Brevibacterium	Group I	Agmunavirus	Agmunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Brevibacterium aurantiacum SMQ-1335	High-quality	High-quality	100.000	AAI-based (high-confidence)	Agmunavirus	Agmunavirus AGM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN023191	Brevibacterium phage AGM16	35637	60.743	Brevibacterium	Group I	Agmunavirus	Agmunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Brevibacterium aurantiacum SMQ-1335	High-quality	High-quality	97.420	AAI-based (high-confidence)	Agmunavirus	Agmunavirus AGM1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN026740	Salmonella phage C2	38554	48.908	Salmonella	Group I	Teseptimavirus	Teseptimavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Gallinarum	High-quality	High-quality	96.610	AAI-based (high-confidence)	Teseptimavirus	Teseptimavirus C2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN026741	Salmonella phage Th1	110466	39.208	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Gallinarum	High-quality	High-quality	97.720	AAI-based (high-confidence)	Tequintavirus	Tequintavirus Th1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MN027503	Enterococcus phage vB_OCPT_Ben	151985	37.089	Enterococcus	Group I	Schiekvirus	Schiekvirus	Brockvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis EnGen0211	Complete	High-quality	100.000	DTR (high-confidence)	Schiekvirus	Schiekvirus ben	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN028536	Staphylococcus phage vB_SpsM_WIS42	40093	35.695	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coventryvirus	Coventryvirus WIS42	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_26;cro orf_32;cro orf_33;cro orf_34;antirepressor orf_39
MN029011	Pseudomonas phage Iggy	60628	56.510	Pseudomonas	Group I	Iggyvirus	Iggyvirus	Queuovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	100.000	AAI-based (high-confidence)	Iggyvirus	Iggyvirus iggy	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN032614	Aeromonas phage PS1	237367	38.792	Aeromonas	Group I	Ferozepurvirus	Ferozepurvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas hydrophila ATCC 7966	High-quality	High-quality	99.820	AAI-based (high-confidence)	Ferozepurvirus	Ferozepurvirus PS1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_41
MN038175	Pantoea phage Phynn	173720	44.654	Pantoea	Group I	Straboviridae	Unclassified	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Panteoa sp. Environmental Isolate	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic