INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN013189 | Microcystis phage Mic1 | 92627 | 35.170 | Microcystis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cyanobacteria | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN013356 | Pseudomonas phage vB_PaM_EPA1 | 91394 | 49.270 | Pseudomonas | Group I | Pakpunavirus | Pakpunavirus | Skurskavirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 98.280 | AAI-based (high-confidence) | Pakpunavirus | Pakpunavirus EPA1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_89 |
| MN016939 | Bacteriophage R18C | 31834 | 51.602 | Unspecified | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | Peduovirus | Peduovirus R18C | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32 |
| MN018232 | Synechococcus phage S-B43 | 213993 | 39.431 | Synechococcus | Group I | Kyanoviridae | Unclassified | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. MW02 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN019128 | Escherichia phage Henu7 | 49526 | 48.205 | Escherichia | Group I | Henuseptimavirus | Henuseptimavirus | Tempevirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DH5 | High-quality | High-quality | 98.250 | AAI-based (high-confidence) | Henuseptimavirus | Henuseptimavirus henu7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN022785 | Escherichia phage VEc20 | 167532 | 35.462 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.600 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN022787 | Salmonella phage VSe12 | 109654 | 39.087 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 97.030 | AAI-based (high-confidence) | Tequintavirus | Tequintavirus VSe12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MN023176 | Brevibacterium phage AGM1 | 36032 | 60.774 | Brevibacterium | Group I | Agmunavirus | Agmunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacterium aurantiacum SMQ-1335 | High-quality | High-quality | 98.500 | AAI-based (high-confidence) | Agmunavirus | Agmunavirus AGM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN023177 | Brevibacterium phage AGM2 | 36032 | 60.771 | Brevibacterium | Group I | Agmunavirus | Agmunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacterium aurantiacum SMQ-1335 | High-quality | High-quality | 98.500 | AAI-based (high-confidence) | Agmunavirus | Agmunavirus AGM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN023178 | Brevibacterium phage AGM3 | 36034 | 60.770 | Brevibacterium | Group I | Agmunavirus | Agmunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevibacterium aurantiacum SMQ-1335 | High-quality | High-quality | 98.500 | AAI-based (high-confidence) | Agmunavirus | Agmunavirus AGM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |