INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MK919480	Mycobacterium phage Techage	47094	67.427	Mycobacterium	Group I	Fishburnevirus	Fishburnevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.120	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus fishburne	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29;immunity orf_30;antirepressor orf_33
MK919481	Gordonia phage Newt	73414	59.026	Gordonia	Group I	Woesvirus	Woesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Woesvirus	Woesvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_3
MK919482	Mycobacterium phage DeepSoil15	53746	67.449	Mycobacterium	Group I	Gilesvirus	Gilesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.970	AAI-based (high-confidence)	Gilesvirus	Gilesvirus giles	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29
MK919483	Gordonia phage Suscepit	50338	66.661	Gordonia	Group I	Nymphadoravirus	Nymphadoravirus	Nymbaxtervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	95.940	AAI-based (high-confidence)	Nymphadoravirus	Nymphadoravirus kita	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_39;immunity orf_44;antirepressor orf_48
MK919484	Arthrobacter phage DreamTeam	43089	60.730	Arthrobacter	Group I	Korravirus	Korravirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	98.580	AAI-based (high-confidence)	Korravirus	Korravirus gisselle	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK922546	Staphylococcus phage SA1-CTA1	17527	28.773	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	99.090	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus SA46CL1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK922547	Staphylococcus phage SA30-CTH2	17545	28.755	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	99.190	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus SA46CL1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK922548	Staphylococcus phage SA46-CTH4	17473	28.764	Staphylococcus	Group I	Rosenblumvirus	Rosenblumvirus	Rakietenvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	98.790	AAI-based (high-confidence)	Rosenblumvirus	Rosenblumvirus SA46CL1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK929790	Caulobacter phage RW	62362	63.771	Caulobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Caulobacter vibrioides CB15	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MK931297	Escherichia phage vB_EcoP_3HA13	70142	41.268	Escherichia	Group I	Enquatrovirus	Enquatrovirus	Enquatrovirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli serotype O111	High-quality	High-quality	96.660	AAI-based (high-confidence)	Enquatrovirus	Enquatrovirus N4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_11