INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MK757446	Mycobacterium phage Candle	71390	55.980	Mycobacterium	Group I	Papyrusvirus	Papyrusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.500	AAI-based (high-confidence)	Papyrusvirus	Papyrusvirus send513	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK757447	Microbacterium phage Greys	41797	63.406	Microbacterium	Group I	Ilzatvirus	Ilzatvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus teagan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK757448	Arthrobacter phage Idaho	15675	63.579	Arthrobacter	Group I	Idahovirus	Idahovirus	Feeclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Idahovirus	Idahovirus idaho	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK757449	Microbacterium phage Akoni	54307	60.140	Microbacterium	Group I	Akonivirus	Akonivirus	Eekayvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	99.700	AAI-based (high-confidence)	Akonivirus	Akonivirus akoni	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK759854	Shigella phage DS8	44605	46.517	Shigella	Group I	Deseoctovirus	Deseoctovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shigella flexneri strain ATCC 29903	Complete	High-quality	100.000	DTR (high-confidence)	Deseoctovirus	Deseoctovirus DS8	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MK759883	Salmonella phage vB_SenS_SB15	41441	49.994	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Braenderup	High-quality	High-quality	96.730	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus SB3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK759884	Salmonella phage vB_SenM_SB18	85311	43.776	Salmonella	Group I	Kolesnikvirus	Kolesnikvirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Infantis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kolesnikvirus	Kolesnikvirus Ea214	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK759918	Bacillus phage vB_BtS_B83	49952	35.790	Bacillus	Group I	Pushchinovirus	Pushchinovirus	Skryabinvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis VKM B-83	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pushchinovirus	Pushchinovirus B83	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31
MK761195	Salmonella phage SF4	43514	49.694	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Jerseyvirus	Jerseyvirus SS5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MK761196	Salmonella phage SF5	42199	49.674	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	Complete	High-quality	100.000	DTR (high-confidence)	Jerseyvirus	Jerseyvirus SS5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic