INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK673511 | Salmonella phage ZCSE2 | 53965 | 45.843 | Salmonella | Group I | Loughboroughvirus | Loughboroughvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis WT (Platten) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Loughboroughvirus | Loughboroughvirus ZCSE2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MK675901 | Shewanella phage S0112 | 62286 | 44.700 | Shewanella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shewanella indica | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK685667 | Klebsiella phage vB_KpnM_IME346 | 49482 | 49.052 | Klebsiella | Group I | Bimevirus | Bimevirus | Jameshumphriesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bimevirus | Bimevirus IME346 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_47 |
| MK685668 | Shigella phage VB_Ship_A7 | 40058 | 48.405 | Shigella | Group I | Berlinvirus | Berlinvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella flexneri A7 | Complete | High-quality | 100.000 | DTR (high-confidence) | Berlinvirus | Berlinvirus A7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK686068 | Streptomyces phage RemusLoopin | 41376 | 62.005 | Streptomyces | Group I | Sebastisaurusvirus | Sebastisaurusvirus | Unclassified | Colingsworthviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces mirabilis NRRL B-2400 | High-quality | High-quality | 99.910 | AAI-based (high-confidence) | Sebastisaurusvirus | Sebastisaurusvirus remusloopin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK686069 | Streptomyces phage Heather | 41238 | 62.845 | Streptomyces | Group I | Sebastisaurusvirus | Sebastisaurusvirus | Unclassified | Colingsworthviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces mirabilis NRRL B-2400 | High-quality | High-quality | 99.500 | AAI-based (high-confidence) | Sebastisaurusvirus | Sebastisaurusvirus heather | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK686071 | Streptomyces phage Mischief19 | 68430 | 68.451 | Streptomyces | Group I | Woodruffvirus | Woodruffvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces mirabilis NRRL B-2400 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK689364 | Edwardsiella phage pEt-SU | 276734 | 43.173 | Edwardsiella | Group I | Petsuvirus | Petsuvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella tarda ATCC 15941 | Complete | High-quality | 100.000 | ITR (high-confidence) | Petsuvirus | Petsuvirus pEtSU | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK693005 | Klebsiella phage KPR2 | 44067 | 53.743 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Drulisvirus | Drulisvirus KPR2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK693030 | Enterococcus phage vB_EfaM_Ef2.1 | 140938 | 35.872 | Enterococcus | Group I | Kochikohdavirus | Kochikohdavirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis strain AH2 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kochikohdavirus | Kochikohdavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |