INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MK512531 | Xanthomonas phage Cf2 | 6454 | 58.181 | Xanthomonas | Group II | Lophivirus | Lophivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Xanthomonas citri subsp. citri Aw12879 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MK514281 | Erwinia phage Rebecca | 273731 | 49.811 | Erwinia | Group I | Agricanvirus | Agricanvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 98.810 | AAI-based (high-confidence) | Agricanvirus | Agricanvirus desertfox | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK514282 | Erwinia phage Derbicus | 223950 | 50.564 | Erwinia | Group I | Derbicusvirus | Derbicusvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | Derbicusvirus | Derbicusvirus derbicus | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK514283 | Pseudomonas phage vB_PaeP_TF17 | 43580 | 45.207 | Pseudomonas | Group I | Jamesmcgillvirus | Jamesmcgillvirus | Unclassified | Fredfastierviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Psuedomonas aeruginosa | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Jamesmcgillvirus | Jamesmcgillvirus PaMx41 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK521904 | Klebsiella phage vB_KpnS_FZ10 | 50381 | 50.660 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus FZ10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK521905 | Klebsiella phage vB_KpnP_FZ12 | 39519 | 53.063 | Klebsiella | Group I | Przondovirus | Przondovirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | Przondovirus | Przondovirus FZ12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK521906 | Klebsiella phage vB_KpnM_FZ14 | 49370 | 48.584 | Klebsiella | Group I | Sircambvirus | Sircambvirus | Jameshumphriesvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Sircambvirus | Sircambvirus FZ14 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_4 |
| MK521907 | Klebsiella phage vB_KpnS_FZ41 | 106104 | 45.221 | Klebsiella | Group I | Sugarlandvirus | Sugarlandvirus | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Sugarlandvirus | Sugarlandvirus FZ41 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK524176 | Escherichia phage PHB11 | 87553 | 38.902 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.420 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus PHB11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MK524177 | Escherichia phage PHB10 | 57228 | 50.252 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | Medium-quality | Genome-fragment | 75.050 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_54 |