Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MK496825Capybara microvirus Cap3_SP_649428940.196UnspecifiedGroup II UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedMicroviricetesPhixviricotaSangerviraeFloreoviria Hydrochoerus hydrochaerisHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingsunknown
MK496826Capybara microvirus Cap3_SP_668414838.163UnspecifiedGroup II UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedMicroviricetesPhixviricotaSangerviraeFloreoviria Hydrochoerus hydrochaerisHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingsunknown
MK501729Gordonia phage Walrus5202467.300GordoniaGroup I JujuvirusJujuvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality100.000AAI-based (high-confidence) JujuvirusJujuvirus walrusThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_40
MK501730Gordonia phage Barco4890567.279GordoniaGroup I JujuvirusJujuvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae 3612High-qualityHigh-quality96.520AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_38;immunity orf_40
MK504442Lactobacillus phage 3-SAC124129240.008LactobacillusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus brevisHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateantirepressor orf_32
MK504443Lactobacillus phage 521B13644232.268LactobacillusGroup I TybeckvirusTybeckvirusUnclassifiedHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus brevisHigh-qualityHigh-quality99.500AAI-based (high-confidence) TybeckvirusTybeckvirus tv521BCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_90
MK504444Lactobacillus phage 3-52114081636.933LactobacillusGroup I WatanabevirusWatanabevirusUnclassifiedHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus brevisHigh-qualityHigh-quality100.000AAI-based (high-confidence) WatanabevirusWatanabevirus wv3521Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MK504445Lactobacillus phage ATCCB8053830.799LactobacillusGroup I TybeckvirinaeUnclassifiedTybeckvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus brevisHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
MK504446Lactobacillus phage SAC12B13660832.411LactobacillusGroup I TybeckvirusTybeckvirusUnclassifiedHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactobacillus brevisHigh-qualityHigh-quality99.620AAI-based (high-confidence) TybeckvirusTybeckvirus SAC12BCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_83
MK509462Shigella phage MK-1315875550.417ShigellaGroup I AgtrevirusAgtrevirusAglimvirinaeAckermannviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Shigella boydii type 1CompleteHigh-quality100.000DTR (high-confidence) AgtrevirusAgtrevirus MK13The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
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