INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF074945 | Mycoplasma phage MAV1 | 15644 | 29.033 | Mycoplasma | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Mycoplasma arthritidis | Medium-quality | Genome-fragment | 82.970 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AF083977 | Escherichia phage Mu | 36717 | 52.055 | Escherichia | Group I | Muvirus | Muvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | High-quality | High-quality | 95.410 | AAI-based (high-confidence) | Muvirus | Muvirus mu | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AF085222 | Streptococcus phage DT1 | 34815 | 39.072 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 93.970 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus DT1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AF109874 | Lactococcus phage Tuc2009 | 38347 | 36.222 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.400 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_3;cro orf_4;antirepressor orf_5 |
| AF115102 | Streptococcus phage Sfi19 | 37370 | 38.274 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus Sfi19 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_28 |
| AF115103 | Streptococcus phage Sfi21 | 40739 | 37.566 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus Sfi21 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_26;cro orf_28;cro orf_29;cro orf_30;antirepressor orf_31 |
| AF125163 | Bacteriophage K139 | 33106 | 48.897 | Unspecified | Group I | Longwoodvirus | Longwoodvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae O139 | High-quality | High-quality | 96.960 | AAI-based (high-confidence) | Longwoodvirus | Longwoodvirus K139 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| AF125520 | Escherichia phage 933W | 61670 | 49.368 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7, strain EDL933 | High-quality | High-quality | 94.160 | AAI-based (high-confidence) | Traversvirus | Traversvirus tv933W | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28;cro orf_29;antirepressor orf_53;antirepressor orf_87 |
| AF133242 | Spiroplasma phage SVTS2 | 6825 | 22.652 | Spiroplasma | Group II | Suturavirus | Suturavirus | Unclassified | Plectroviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AF145054 | Streptococcus phage 7201 | 35466 | 38.727 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 96.390 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus mv7201 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |