Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PZ223990Escherichia phage vB_EcoS_QH055102545.501EscherichiaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli ATCC 38006High-qualityHigh-quality100.000AAI-based (high-confidence) TunavirusTunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ223989Escherichia phage vB_EcoS_QH045020845.248EscherichiaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli ATCC 38006High-qualityHigh-quality100.000AAI-based (high-confidence) TunavirusTunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ212788Escherichia phage 554013107143.703EscherichiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coli ET38 (527_CL100139376_L02)High-qualityHigh-quality93.450AAI-based (high-confidence) VequintavirusVequintavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ211972Aeromonas phage vB_AerC_AG31P35203352.284AeromonasGroup I ChaseviridaeUnclassifiedUnclassifiedChaseviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas dhakensis 4.4THigh-qualityHigh-quality98.820AAI-based (high-confidence) PhayathaivirusPhayathaivirus pAh62TGThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PZ201853Streptomyces phage ZRIMUP801871753.898StreptomycesGroup I DeltatectivirusDeltatectivirusUnclassifiedTectiviridaeKalamaviralesTectiliviricetesPreplasmiviricotaBamfordviraeVaridnaviria Streptomyces scabieiHigh-qualityHigh-quality100.000AAI-based (high-confidence) DeltatectivirusDeltatectivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ201852Streptomyces phage ZRIMUP761863454.003StreptomycesGroup I DeltatectivirusDeltatectivirusUnclassifiedTectiviridaeKalamaviralesTectiliviricetesPreplasmiviricotaBamfordviraeVaridnaviria Streptomyces scabieiCompleteHigh-quality100.000DTR (high-confidence) DeltatectivirusDeltatectivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ196028Enterobacter phage EH-CS1915752250.178EnterobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Enterobacter hormaecheiHigh-qualityHigh-quality99.680AAI-based (high-confidence) AgtrevirusAgtrevirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PZ195872Klebsiella phage vB_KpnS_ZCKP095782856.130KlebsiellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Klebsiella pneumoniaeHigh-qualityHigh-quality98.850AAI-based (high-confidence) YonseivirusYonseivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PZ193109Pseudomonas phage XC29559749.421PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas sp. GXZCCompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PZ188960Betapleolipovirus sp.1419362.622UnspecifiedGroup II BetapleolipovirusBetapleolipovirusUnclassifiedPleolipoviridaeHaloruviralesHuolimaviricetesSaleviricotaTrapaviraeFloreoviria Halorubrum sp. N63High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_2
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