INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ623422 | Pseudomonas phage vB_PaeM_PL1 | 91716 | 49.384 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ623198 | Streptomyces phage Morgenstelle | 49639 | 65.251 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces coelicolor A3(2) | High-quality | High-quality | 98.640 | AAI-based (high-confidence) | Likavirus | Likavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_9;immunity orf_29 |
| PZ622771 | Ruegeria phage DSS3_VP2 | 74897 | 47.381 | Ruegeria | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Ruegeria pomeroyi DSS-3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Noahvirus | Noahvirus arc | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ622752 | Vibrio phage RJ02 | 210543 | 41.841 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio cholerae | Complete | High-quality | 100.000 | DTR (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ622727 | Pseudomonas phage CSSBELLO | 72150 | 54.875 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Litunavirus | Litunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ622597 | Staphylococcus phage vB_ShyM_BFQL3 | 116985 | 31.306 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus hyicus 369 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ622596 | Staphylococcus phage vB_ShyM_BFQL1 | 139071 | 30.473 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus hyicus 392 | High-quality | High-quality | 98.200 | AAI-based (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ622595 | Staphylococcus phage vB_ShyM_BFQL10 | 134303 | 30.232 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus hyicus 373 | High-quality | High-quality | 94.690 | AAI-based (high-confidence) | Twortvirus | Twortvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_177 |
| PZ622594 | Staphylococcus phage vB_ShyM_BFQE9 | 132597 | 30.255 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus hyicus 359 | High-quality | High-quality | 93.530 | AAI-based (high-confidence) | Twortvirus | Twortvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_58 |
| PZ622593 | Staphylococcus phage vB_ShyM_BFQE4 | 132595 | 30.259 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus hyicus 369 | Complete | High-quality | 100.000 | DTR (high-confidence) | Twortvirus | Twortvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_181 |