INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP079415 | Xanthomonas phage SB4 | 44323 | 57.857 | Xanthomonas | Group I | Ceskevirus | Ceskevirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas euvesicatoria 1940 | Complete | High-quality | 100.000 | DTR (high-confidence) | Ceskevirus | Ceskevirus SB4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP079414 | Xanthomonas phage SB3 | 43093 | 59.244 | Xanthomonas | Group I | Euvesivirus | Euvesivirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas euvesicatoria 1940 | Complete | High-quality | 100.000 | DTR (high-confidence) | Euvesivirus | Euvesivirus SB3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP079413 | Xanthomonas phage SB1 | 43983 | 60.130 | Xanthomonas | Group I | Smasvirus | Smasvirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas euvesicatoria 1940 | Complete | High-quality | 100.000 | DTR (high-confidence) | Smasvirus | Smasvirus SB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP079243 | Burkholderia phage vB_BpP_HN02 | 73420 | 52.345 | Burkholderia | Group I | Dongfangvirus | Dongfangvirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholdria pseudomallei | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dongfangvirus | Dongfangvirus Hn02 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP079212 | Escherichia phage phiHAO2-2 | 39299 | 49.673 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli E18055 | High-quality | High-quality | 98.790 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP079211 | Escherichia phage phiHAO1-1 | 40137 | 49.745 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli APEC E13010 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP079210 | Escherichia phage phiYIO1-1 | 40520 | 49.882 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP079187 | Erwinia phage vEam_S_24 | 84690 | 43.414 | Erwinia | Group I | Kolesnikvirus | Kolesnikvirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora IVIA 1892.1 | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Kolesnikvirus | Kolesnikvirus M7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP079186 | Erwinia phage vEam_W_28 | 84690 | 43.416 | Erwinia | Group I | Kolesnikvirus | Kolesnikvirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora IVIA 1892.1 | High-quality | High-quality | 99.830 | AAI-based (high-confidence) | Kolesnikvirus | Kolesnikvirus M7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP079185 | Erwinia phage vEam_PM_21 | 84686 | 43.418 | Erwinia | Group I | Kolesnikvirus | Kolesnikvirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Erwinia amylovora IVIA 1892.1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kolesnikvirus | Kolesnikvirus M7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |