INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PP098623	Staphylococcus phage 7094	43312	34.510	Staphylococcus	Group I	Dubowvirus	Dubowvirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dubowvirus	Dubowvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_5;integrase orf_36
PP098622	Staphylococcus phage 6199	43070	35.387	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_5;antirepressor orf_10;integrase orf_34
PP098621	Staphylococcus phage 2339	43150	34.797	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;antirepressor orf_6;integrase orf_32
PP096838	Klebsiella phage vB_KpnP_KP17	39936	52.850	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.630	AAI-based (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP094284	Vibrio phage vB_ValS_R12Z	77357	48.811	Vibrio	Group I	Mardecavirus	Mardecavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio alginolyticus NBRC 15630 = ATCC 17749	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mardecavirus	Mardecavirus SSP002	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PP094244	Salmonella phage vB_SalS-SIA3lw	116541	39.104	Salmonella	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Infantis	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus mar004NP2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PP092045	Enterococcus phage EF_TR1	57850	39.927	Enterococcus	Group I	Saphexavirus	Saphexavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ATCC 29212	High-quality	High-quality	100.000	AAI-based (high-confidence)	Saphexavirus	Saphexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP091972	Acinetobacter phage vB_MZM_4AB-P	42975	40.572	Acinetobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	Complete	High-quality	100.000	DTR (high-confidence)	Daemvirus	Daemvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP091971	Acinetobacter phage vB_MZM_2AB-P	43664	47.765	Acinetobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PP091924	Streptococcus phage phiStag1_20280_6_181	54209	41.534	Streptococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Streptococcus agalactiae 20280_6_181	Medium-quality	Genome-fragment	84.010	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_3