INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP216085 | Escherichia phage vB_EcoM_HZ_ZJUN4 | 167022 | 35.477 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli NDM-1 | High-quality | High-quality | 99.370 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP216084 | Escherichia phage vB_EcoS_HZ_ZJUN2 | 110208 | 39.009 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli NDM-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP216083 | Pseudomonas phage vB_PaeM_HZ_ZJUPA3 | 65421 | 55.658 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | High-quality | High-quality | 99.050 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus USP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP213477 | Escherichia phage vB_Eco_ZCEC08 | 47926 | 46.534 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PP213450 | Salmonella phage ZBSTP12 | 111225 | 40.003 | Salmonella | Group I | Epseptimavirus | Epseptimavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium BNCC 108207 | Complete | High-quality | 100.000 | DTR (high-confidence) | Epseptimavirus | Epseptimavirus ev329 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PP213047 | Staphylococcus phage vB_G30_01 | 41707 | 33.548 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus warneri G30 | High-quality | High-quality | 96.690 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;cro orf_6;antirepressor orf_8 |
| PP212903 | Staphylococcus phage PT94 | 86686 | 31.763 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus chromogenes | High-quality | High-quality | 95.180 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP212902 | Staphylococcus phage PT1-9 | 18318 | 34.474 | Staphylococcus | Group I | Andhravirus | Andhravirus | Rakietenvirinae | Rountreeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus chromogenes | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP212901 | Staphylococcus phage PT1-4 | 88645 | 31.373 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus gallinarum | High-quality | High-quality | 97.400 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP212900 | Staphylococcus phage PT1-1 | 86115 | 31.782 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus chromogenes | High-quality | High-quality | 94.600 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |