INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OZ418230 | Escherichia phage jv_4E6 | 42499 | 50.566 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | Medium-quality | Genome-fragment | 89.500 | AAI-based (high-confidence) | Jouyvirus | Jouyvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;cro orf_41;cro orf_42 |
| OZ418229 | Escherichia phage Josas_2H4 | 50385 | 49.961 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Glaedevirus | Glaedevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_29;cro orf_37 |
| OZ413490 | Pseudomonas phage GAS_0134 | 47617 | 60.239 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | High-quality | High-quality | 95.390 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_26 |
| OZ413489 | Escherichia phage CCE_0050 | 132638 | 43.685 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | High-quality | High-quality | 94.550 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OZ413487 | Escherichia phage CCE_0047 | 132741 | 43.679 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | High-quality | High-quality | 94.630 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OZ413486 | Escherichia phage CCE_0049 | 132668 | 43.680 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | High-quality | High-quality | 94.580 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OZ410354 | Salmonella phage SPFM7 | 240070 | 48.619 | Salmonella | Group I | Seoulvirus | Seoulvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | Seoulvirus | Seoulvirus SPN3US | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_76 |
| OZ410353 | Salmonella phage SPFM8 | 240070 | 48.619 | Salmonella | Group I | Seoulvirus | Seoulvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | Seoulvirus | Seoulvirus SPN3US | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_76 |
| OZ410352 | Salmonella phage SPFM4 | 240070 | 48.619 | Salmonella | Group I | Seoulvirus | Seoulvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | Seoulvirus | Seoulvirus SPN3US | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_76 |
| OZ410351 | Salmonella phage SPFM22 | 240069 | 48.619 | Salmonella | Group I | Seoulvirus | Seoulvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.690 | AAI-based (high-confidence) | Seoulvirus | Seoulvirus SPN3US | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_76 |