INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP047753 | Escherichia phage KEP3 | 88314 | 39.027 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ATCC 35150 | Complete | High-quality | 100.000 | DTR (high-confidence) | Felixounavirus | Felixounavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP047752 | Escherichia phage KEP2 | 85854 | 38.753 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ATCC 35150 | High-quality | High-quality | 97.500 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP035218 | Mycobacterium phage PRodriguez | 70064 | 68.430 | Mycobacterium | Group I | Acadianvirus | Acadianvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc^2 155 | High-quality | High-quality | 99.810 | AAI-based (high-confidence) | Acadianvirus | Acadianvirus acadian | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP035217 | Mycobacterium phage Suarez | 70786 | 65.500 | Mycobacterium | Group I | Corndogvirus | Corndogvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc^2 155 | High-quality | High-quality | 98.350 | AAI-based (high-confidence) | Corndogvirus | Corndogvirus firecracker | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP034390 | Staphylococcus phage CF5 | 135050 | 29.285 | Staphylococcus | Group I | Silviavirus | Silviavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus warneri PJI isolate 5 | High-quality | High-quality | 95.710 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP034389 | Staphylococcus phage CF9 | 97081 | 29.291 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis PJI isolate 9 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sextaecvirus | Sextaecvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_45 |
| PP034388 | Staphylococcus phage CF7 | 138217 | 30.986 | Staphylococcus | Group I | Twortvirinae | Unclassified | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus succinis PJI isolate 7 | High-quality | High-quality | 97.650 | AAI-based (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP034387 | Staphylococcus phage CF1 | 96354 | 29.296 | Staphylococcus | Group I | Sextaecvirus | Sextaecvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis PJI isolate 1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sextaecvirus | Sextaecvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_40 |
| PP034127 | Salmonella phage L223 | 44321 | 49.690 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | Complete | High-quality | 100.000 | DTR (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP028463 | Enterococcus phage EF_RCK | 57853 | 39.910 | Enterococcus | Group I | Saphexavirus | Saphexavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis ATCC 29212 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Saphexavirus | Saphexavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |