Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP069512Escherichia phage TR34474743.786EscherichiaGroup I BraunvirinaeUnclassifiedBraunvirinaeDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia sp.High-qualityHigh-quality91.220AAI-based (high-confidence) RtpvirusRtpvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP068124Salmonella phage FM4b8200339.007SalmonellaGroup I FelixounavirusFelixounavirusOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica serotype Enteritidis B-1024CompleteHigh-quality100.000DTR (high-confidence) FelixounavirusFelixounavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP068123Salmonella phage FG1m8131039.015SalmonellaGroup I FelixounavirusFelixounavirusOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica serotype Typhimurium B-1025CompleteHigh-quality100.000DTR (high-confidence) FelixounavirusFelixounavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP067092Pseudomonas phage PAShipCat15060259.298PseudomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_53
PP063013Enterococcus phage EF_TR25785139.911EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis ATCC 29212High-qualityHigh-quality100.000AAI-based (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP063012Enterococcus phage EF_KTM5784639.918EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis ATCC 29212High-qualityHigh-quality100.000AAI-based (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP063011Enterococcus phage EF_PFS5786239.919EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis ATCC 29212High-qualityHigh-quality100.000AAI-based (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP063010Enterococcus phage EF_FB5786039.917EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis ATCC 29212High-qualityHigh-quality100.000AAI-based (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP063009Enterococcus phage EF_CW5785639.918EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis ATCC 29212High-qualityHigh-quality100.000AAI-based (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP063008Enterococcus phage EF_CM5785539.919EnterococcusGroup I SaphexavirusSaphexavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis ATCC 29212High-qualityHigh-quality100.000AAI-based (high-confidence) SaphexavirusSaphexavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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