Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP083312Pseudomonas phage VB_PaN_phPA-Intesti8774654.775PseudomonasGroup I NankokuvirusNankokuvirusUnclassifiedVandenendeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) NankokuvirusNankokuvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP083311Pseudomonas phage VB_PaD_phPA-G5483458.165PseudomonasGroup I DetrevirusDetrevirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality98.540AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperatecro orf_27;integrase orf_38
PP083182Escherichia phage P1514050048.227EscherichiaGroup I BerlinvirusBerlinvirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) BerlinvirusBerlinvirus P151Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP079418Stenotrophomonas phage SOVA9654642351.261StenotrophomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Stenotrophomonas maltophilia 1640High-qualityHigh-quality91.390AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PP079417Stenotrophomonas phage SB54374762.871StenotrophomonasGroup I PradovirusPradovirusGujervirinaeAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Stenotrophomonas maltophilia 1640CompleteHigh-quality100.000DTR (high-confidence) PradovirusPradovirus SB5Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP079416Stenotrophomonas phage SB24310360.244StenotrophomonasGroup I PonderosavirusPonderosavirusGujervirinaeAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Stenotrophomonas maltophilia 1640High-qualityHigh-quality100.000AAI-based (high-confidence) PonderosavirusPonderosavirus SB2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP079415Xanthomonas phage SB44432357.857XanthomonasGroup I CeskevirusCeskevirusGujervirinaeAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas euvesicatoria 1940CompleteHigh-quality100.000DTR (high-confidence) CeskevirusCeskevirus SB4Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP079414Xanthomonas phage SB34309359.244XanthomonasGroup I EuvesivirusEuvesivirusUnclassifiedAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas euvesicatoria 1940CompleteHigh-quality100.000DTR (high-confidence) EuvesivirusEuvesivirus SB3Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP079413Xanthomonas phage SB14398360.130XanthomonasGroup I SmasvirusSmasvirusGujervirinaeAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xanthomonas euvesicatoria 1940CompleteHigh-quality100.000DTR (high-confidence) SmasvirusSmasvirus SB1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP079243Burkholderia phage vB_BpP_HN027342052.345BurkholderiaGroup I DongfangvirusDongfangvirusUnclassifiedSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Burkholdria pseudomalleiHigh-qualityHigh-quality100.000AAI-based (high-confidence) DongfangvirusDongfangvirus Hn02Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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