Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP110483Synechococcus phage MA1017403049.799SynechococcusGroup I MakaravirusMakaravirusUnclassifiedKyanoviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Synechococcus sp. MW02CompleteHigh-quality100.000DTR (high-confidence) MakaravirusMakaravirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP107930Escherichia phage FXie-2024a5338343.673EscherichiaGroup I CarltongylesvirusCarltongylesvirusCleopatravirinaeChaseviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) CarltongylesvirusCarltongylesvirus FXie2024aCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP107912Klebsiella phage vB_kpnM_D14292549.563KlebsiellaGroup I GuernseyvirinaeUnclassifiedGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality99.920AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PP107878Vibrio phage pVco-77503438.701VibrioGroup I SchitoviridaeUnclassifiedUnclassifiedSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio coralliilyticus 58High-qualityHigh-quality100.000AAI-based (high-confidence) VicoquintavirusVicoquintavirus Pvco5Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP105779Salmonella phage vB_SalS-SIY1lw12393240.254SalmonellaGroup I EpseptimavirusEpseptimavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella infantisCompleteHigh-quality100.000DTR (high-confidence) EpseptimavirusEpseptimavirus 118970sal2The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP105577Klebsiella phage KpV924152853.222KlebsiellaGroup I PrzondovirusPrzondovirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeCompleteHigh-quality100.000DTR (high-confidence) PrzondovirusPrzondovirus KpV92Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP103294Salmonella phage vB_SM-P8601538.811SalmonellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella sp.CompleteHigh-quality100.000DTR (high-confidence) FelixounavirusFelixounavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP101686Listeria phage 805405-113475435.907ListeriaGroup I PecentumvirusPecentumvirusJasinskavirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Listeria monocytogenesHigh-qualityHigh-quality97.620AAI-based (high-confidence) PecentumvirusPecentumvirus LP048Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP101685Listeria phage 20422-113475535.905ListeriaGroup I PecentumvirusPecentumvirusJasinskavirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Listeria monocytogenesHigh-qualityHigh-quality97.620AAI-based (high-confidence) PecentumvirusPecentumvirus LP048Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP100845Burkholderia phage vB_BpP_HN057534952.184BurkholderiaGroup I DongfangvirusDongfangvirusUnclassifiedSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Burkholderia pseudomallei BpHNBP001High-qualityHigh-quality100.000AAI-based (high-confidence) DongfangvirusDongfangvirus Hn05Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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