INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PZ319870	Microbacterium phage TwoBits	40292	63.881	Microbacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	99.290	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
PZ319869	Streptomyces phage Jhitchelle	48149	65.582	Streptomyces	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Streptomyces bicolor NRRL B-3897	High-quality	High-quality	95.900	AAI-based (high-confidence)	Camvirus	Camvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_28;integrase orf_48
PZ319868	Rhodococcus phage RegnumDei	64339	63.915	Rhodococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Prescottella equi NRRL B-16538 (synonym: Rhodococcus equi)	High-quality	High-quality	100.000	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PZ319867	Arthrobacter phage TMaxx	41179	58.676	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter globiformis B-2979	Low-quality	Genome-fragment	34.150	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PZ319866	Mycobacterium phage MulchExplorer	56497	61.439	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.120	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus kimberlium	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_42;immunity orf_44;antirepressor orf_46;integrase orf_47
PZ319865	Gordonia phage CherryCola	59063	67.789	Gordonia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Gordonia terrae 3612	High-quality	High-quality	99.600	AAI-based (high-confidence)	Wizardvirus	Wizardvirus valary	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_24;integrase orf_46;integrase orf_49
PZ319864	Streptomyces phage Monse	43522	60.450	Streptomyces	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Streptomyces lividans NRRL B-12275	Medium-quality	Genome-fragment	86.890	AAI-based (high-confidence)	Scapunavirus	Scapunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ319863	Microbacterium phage Anilorac	41753	63.576	Microbacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PZ319862	Streptomyces phage Sudan	48808	65.926	Streptomyces	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Streptomyces bicolor NRRL B-3897	High-quality	High-quality	98.870	AAI-based (high-confidence)	Camvirus	Camvirus alsaber	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	immunity orf_29;integrase orf_49
PZ319861	Mycobacterium phage GoongGoong	65050	63.364	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.270	AAI-based (high-confidence)	Marvinvirus	Marvinvirus mosmoris	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic