Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP235089Klebsiella phage KpS24795950.308KlebsiellaGroup I WebervirusWebervirusUnclassifiedDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality96.800AAI-based (high-confidence) WebervirusWebervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP232116Mesorhizobium phage vB_MseS-P14079563.250MesorhizobiumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mesorhizobium sediminum CBW1107-2CompleteHigh-quality100.000DTR (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PP230461Bordetella phage PY2234489461.402BordetellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bordetella bronchisepticaHigh-qualityHigh-quality98.720AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PP226939Aeromonas phage phiA014S4107455.556AeromonasGroup I CoryciavirusCoryciavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas hydrophilaHigh-qualityHigh-quality100.000AAI-based (high-confidence) CoryciavirusCoryciavirus A014SCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP226938Aeromonas phage phiA014L4153659.127AeromonasGroup I AhphunavirusAhphunavirusMelnykvirinaeAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas hydrophilaHigh-qualityHigh-quality98.660AAI-based (high-confidence) AhphunavirusAhphunavirus A014LCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP216086Pseudomonas phage vB_PaeM_HZ_ZJUPA66625355.610PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas sp.High-qualityHigh-quality100.000AAI-based (high-confidence) PbunavirusPbunavirus LS1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP216085Escherichia phage vB_EcoM_HZ_ZJUN416702235.477EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli NDM-1High-qualityHigh-quality99.370AAI-based (high-confidence) TequatrovirusTequatrovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP216084Escherichia phage vB_EcoS_HZ_ZJUN211020839.009EscherichiaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli NDM-1CompleteHigh-quality100.000DTR (high-confidence) TequintavirusTequintavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP216083Pseudomonas phage vB_PaeM_HZ_ZJUPA36542155.658PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa PAO1High-qualityHigh-quality99.050AAI-based (high-confidence) PbunavirusPbunavirus USP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP213477Escherichia phage vB_Eco_ZCEC084792646.534EscherichiaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
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