INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP316168 | Ralstonia phage RS-AB1 | 41668 | 64.296 | Ralstonia | Group I | Acarajevirus | Acarajevirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum and Ralstonia pseudosolanacearum | Complete | High-quality | 100.000 | DTR (high-confidence) | Acarajevirus | Acarajevirus bahia | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| PP314354 | Leeuwenhoekiella phage vB_LaeS_Arctus_1 | 42666 | 34.911 | Leeuwenhoekiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Leeuwenhoekiella aequorea Arc30 | Low-quality | Genome-fragment | 48.410 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_76 |
| PP314035 | Pseudomonas phage ISPAA97 | 65906 | 55.003 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 99.780 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus R26 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP314034 | Staphylococcus phage IMMEA97 | 43288 | 26.204 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phietavirus | Phietavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1 |
| PP313117 | Xanthomonas phage Kintu | 48985 | 51.706 | Xanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas vasicola pv. musacearum Xvm9-7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PP312928 | Klebsiella phage vB_KpnM_W15-2 | 153700 | 39.546 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ATCC 13883 | Complete | High-quality | 100.000 | DTR (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP312927 | Klebsiella phage vB_KpnM_W14-4 | 167979 | 39.516 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae ATCC 13883 | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP301343 | Escherichia phage UE-M6 | 76110 | 42.894 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli UPEC | Complete | High-quality | 100.000 | DTR (high-confidence) | Gamaleyavirus | Gamaleyavirus Ues5a | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP301342 | Escherichia phage UE-M3 | 73728 | 42.992 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli UPEC | Complete | High-quality | 100.000 | DTR (high-confidence) | Gamaleyavirus | Gamaleyavirus Ues5a | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP301341 | Escherichia phage UE-S5b | 73766 | 42.953 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli UPEC | Complete | High-quality | 100.000 | DTR (high-confidence) | Gamaleyavirus | Gamaleyavirus Ues5a | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |