INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
PP418987	Escherichia phage UPWr_E4	168989	35.317	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli 158B lux	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP418986	Escherichia phage UPWr_E2	168127	35.334	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli 158B lux	High-quality	High-quality	99.930	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP418985	Escherichia phage UPWr_E1	167943	40.581	Escherichia	Group I	Krischvirus	Krischvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli 158B lux	High-quality	High-quality	100.000	AAI-based (high-confidence)	Krischvirus	Krischvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP417939	Rhizobium phage IC12	150526	47.257	Rhizobium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Agrobacterium radiobacter M13 (synonym: Rhizobium radiobacter)	High-quality	High-quality	99.330	AAI-based (high-confidence)	Heverleevirus	Heverleevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP417747	Enterobacteria phage ST5386	5386	44.709	Enterobacteria	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterobacteria	High-quality	High-quality	91.700	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	unknown
PP412865	Enterobacteria phage PRDwine	14927	48.469	Enterobacteria	Group I	Tectiviridae	Unclassified	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Salmonella enterica serovar Typhimurium LT2 - pKJK5	High-quality	High-quality	99.850	AAI-based (high-confidence)	Alphatectivirus	Alphatectivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP412864	Enterobacteria phage PRDvermilion	14723	48.346	Enterobacteria	Group I	Alphatectivirus	Alphatectivirus	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Salmonella enterica serovar Typhimurium LT2 - pKJK5	High-quality	High-quality	98.480	AAI-based (high-confidence)	Alphatectivirus	Alphatectivirus PRD1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP412863	Enterobacteria phage PRDturquoise	14651	47.915	Enterobacteria	Group I	Alphatectivirus	Alphatectivirus	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Salmonella enterica serovar Typhimurium LT2 - pKJK5	High-quality	High-quality	98.000	AAI-based (high-confidence)	Alphatectivirus	Alphatectivirus PRD1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP412862	Enterobacteria phage PRDteal	14728	48.214	Enterobacteria	Group I	Alphatectivirus	Alphatectivirus	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Salmonella enterica serovar Typhimurium LT2 - pKJK5	High-quality	High-quality	98.520	AAI-based (high-confidence)	Alphatectivirus	Alphatectivirus PRD1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP412861	Enterobacteria phage PRDsky	14649	48.386	Enterobacteria	Group I	Tectiviridae	Unclassified	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Salmonella enterica serovar Typhimurium LT2 - pKJK5	High-quality	High-quality	97.990	AAI-based (high-confidence)	Alphatectivirus	Alphatectivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic