INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PP456878	Pseudomonas phage vB_PaePAO1-KEN19	278921	36.929	Pseudomonas	Group I	Phikzvirus	Phikzvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa ATCC 10145	High-quality	High-quality	99.500	AAI-based (high-confidence)	Phikzvirus	Phikzvirus phiKZ	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP456877	Pseudomonas phage vB_Pae3705-KEN49	280231	36.839	Pseudomonas	Group I	Phikzvirus	Phikzvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa MRSN 3705	High-quality	High-quality	99.960	AAI-based (high-confidence)	Phikzvirus	Phikzvirus phiKZ	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP454755	Klebsiella phage vB_KpP_GP-5	39069	50.633	Klebsiella	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae KP411	Complete	High-quality	100.000	DTR (high-confidence)	Teetrevirus	Teetrevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP454754	Klebsiella phage vB_KpP_GP-4	43687	55.827	Klebsiella	Group I	Melnykvirinae	Unclassified	Melnykvirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae KP-20LU	Complete	High-quality	100.000	DTR (high-confidence)	Cullenvirus	Cullenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP454753	Klebsiella phage vB_KpP_GP-2	41109	52.757	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae KP263	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP454752	Klebsiella phage vB_KpS_GP-1	47648	48.271	Klebsiella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae EuSCAPE_IT395	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
PP453689	Escherichia phage vB_EcoP_LHP	42132	54.552	Escherichia	Group I	Jimeivirus	Jimeivirus	Melnykvirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K12 (RP4)	Complete	High-quality	100.000	DTR (high-confidence)	Jimeivirus	Jimeivirus LHP	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP453650	Listeria phage vB_Lmo_C2	35285	36.803	Listeria	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Listeria monocytogenes LM7	Medium-quality	Genome-fragment	87.370	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_22;integrase orf_30
PP453649	Listeria phage vB_Lmo_W16	42319	36.631	Listeria	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Listeria monocytogenes LM7	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aquingentivirus	Aquingentivirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_53;cro orf_62;integrase orf_67
PP453648	Listeria phage vB_Lmo_3274	42318	36.632	Listeria	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Listeria monocytogenes LM6	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aquingentivirus	Aquingentivirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_7;cro orf_16;integrase orf_21