INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PP537959 | Streptomyces phage Leo04 | 133191 | 50.008 | Streptomyces | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | Samistivirus | Samistivirus peebs | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP537919 | Serratia phage WR01 | 67868 | 49.916 | Serratia | Group I | Myosmarvirus | Myosmarvirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens Tom1 | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Myosmarvirus | Myosmarvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP537791 | Citrobacter phage vB_CfrS_K1M | 47995 | 45.119 | Citrobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PP537607 | Yersinia phage vB_YpM_MHG101 | 29821 | 53.751 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | High-quality | High-quality | 94.040 | AAI-based (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_15 |
| PP537606 | Yersinia phage vB_YpM_MHG96 | 29902 | 53.809 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | High-quality | High-quality | 94.290 | AAI-based (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27 |
| PP537605 | Yersinia phage vB_YpM_MHG75 | 29011 | 53.828 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | High-quality | High-quality | 91.230 | AAI-based (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28 |
| PP537604 | Yersinia phage vB_YpM_MHG55 | 29758 | 53.693 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | High-quality | High-quality | 93.830 | AAI-based (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27 |
| PP537603 | Yersinia phage vB_YpM_MHG51 | 29687 | 53.690 | Yersinia | Group I | Eganvirus | Eganvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis EV76-CN | Complete | High-quality | 100.000 | DTR (high-confidence) | Eganvirus | Eganvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32 |
| PP537413 | Salmonella phage vB_SenS_4FS1 | 42485 | 49.514 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 99.220 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PP537389 | Pantoea phage PA-1 | 69452 | 46.140 | Pantoea | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pantoea ananatis ZJU1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |