Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP537959Streptomyces phage Leo0413319150.008StreptomycesUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Streptomyces lividans JI 1326CompleteHigh-quality100.000DTR (high-confidence) SamistivirusSamistivirus peebsCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP537919Serratia phage WR016786849.916SerratiaGroup I MyosmarvirusMyosmarvirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Serratia marcescens Tom1High-qualityHigh-quality99.560AAI-based (high-confidence) MyosmarvirusMyosmarvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP537791Citrobacter phage vB_CfrS_K1M4799545.119CitrobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundiiHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PP537607Yersinia phage vB_YpM_MHG1012982153.751YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNHigh-qualityHigh-quality94.040AAI-based (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_15
PP537606Yersinia phage vB_YpM_MHG962990253.809YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNHigh-qualityHigh-quality94.290AAI-based (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_27
PP537605Yersinia phage vB_YpM_MHG752901153.828YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNHigh-qualityHigh-quality91.230AAI-based (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28
PP537604Yersinia phage vB_YpM_MHG552975853.693YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNHigh-qualityHigh-quality93.830AAI-based (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_27
PP537603Yersinia phage vB_YpM_MHG512968753.690YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNCompleteHigh-quality100.000DTR (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_32
PP537413Salmonella phage vB_SenS_4FS14248549.514SalmonellaGroup I JerseyvirusJerseyvirusGuernseyvirinaeSarkviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella sp.High-qualityHigh-quality99.220AAI-based (high-confidence) JerseyvirusJerseyvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP537389Pantoea phage PA-16945246.140PantoeaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pantoea ananatis ZJU1High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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