Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP626411Bacillus phage fHSPT315018739.071BacillusGroup I SiophivirusSiophivirusBastillevirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus subtilis subsp. subtilis str. 168High-qualityHigh-quality97.920AAI-based (high-confidence) SiophivirusSiophivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP626088Aeromonas phage PhiAC505_WBB4000059.375AeromonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas caviaeHigh-qualityHigh-quality95.450AAI-based (high-confidence) AtoyacvirusAtoyacvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP601405Listeria phage 1844068236.080ListeriaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Listeria monocytogenes 1184High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateantirepressor orf_37;cro orf_43
PP601403Aeromonas phage ACP123616538.340AeromonasGroup I FerozepurvirusFerozepurvirusUnclassifiedChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas caviaeHigh-qualityHigh-quality99.400AAI-based (high-confidence) FerozepurvirusFerozepurvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP601402Aeromonas phage AVP35990559.875AeromonasGroup I CasjensviridaeUnclassifiedUnclassifiedCasjensviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Aeromonas veronii A10High-qualityHigh-quality99.940AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PP600584Liberibacter phage pCLasFJSC2d886936.791LiberibacterGroup II UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedMicroviricetesPhixviricotaSangerviraeFloreoviria Candidatus Liberibacter asiaticus FJSC2dLow-qualityGenome-fragment26.560HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
PP600583Liberibacter phage pCLasFJQZ7992886936.791LiberibacterGroup II UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedMicroviricetesPhixviricotaSangerviraeFloreoviria Candidatus Liberibacter asiaticus FJQZ7992Low-qualityGenome-fragment26.560HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingslytic
PP599997Yersinia phage vB_YpM_MHG482974153.707YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNHigh-qualityHigh-quality93.790AAI-based (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_14
PP599996Yersinia phage vB_YpM_MHG72969753.726YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNCompleteHigh-quality100.000DTR (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_6
PP599995Yersinia phage vB_YpM_MHG542969753.682YersiniaGroup I EganvirusEganvirusUnclassifiedPeduoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Yersinia pestis EV76-CNCompleteHigh-quality100.000DTR (high-confidence) EganvirusEganvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_2
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