INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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Genus (TaxMyPhage)

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PP738764	Klebsiella phage vB_KpnM_Shark_ER15	165587	39.576	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella quasipneumoniae K6 (ATCC 700603)	High-quality	High-quality	97.950	AAI-based (high-confidence)	Jiaodavirus	Jiaodavirus jd18	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP738763	Klebsiella phage vB_KpnM_Croc_ER14	158363	46.450	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae MH258 (clinical isolate)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Taipeivirus	Taipeivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP738762	Klebsiella phage vB_KpnM_Wolf_ER13	164874	39.457	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae 1100975 (ATCC BAA-2472)	High-quality	High-quality	97.630	AAI-based (high-confidence)	Jiaodavirus	Jiaodavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP738761	Klebsiella phage vB_KpnM_Trex_ER12	157764	46.369	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae MH258 (clinical isolate)	High-quality	High-quality	99.830	AAI-based (high-confidence)	Taipeivirus	Taipeivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP738760	Klebsiella phage vB_KpnM_Lion_ER11	164356	39.231	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae 1100975 (ATCC BAA-2472)	High-quality	High-quality	97.500	AAI-based (high-confidence)	Jiaodavirus	Jiaodavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP738759	Klebsiella phage vB_KpnS_Fox_ER10	48685	51.168	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella quasipneumoniae K6 (ATCC 700603)	High-quality	High-quality	98.280	AAI-based (high-confidence)	Webervirus	Webervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP738758	Klebsiella phage vB_KpnS_Tin1_ER1	48816	50.971	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella quasipneumoniae K6 (ATCC 700603)	High-quality	High-quality	98.520	AAI-based (high-confidence)	Webervirus	Webervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP736830	Klebsiella phage PhiK2046	174336	41.921	Klebsiella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae FK2046	High-quality	High-quality	97.850	AAI-based (high-confidence)	Slopekvirus	Slopekvirus eap3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP735386	Pseudomonas phage vB_PaeP-F1Pa	62345	63.357	Pseudomonas	Group I	Hollowayvirus	Hollowayvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa ATCC 15692 (PAO1)	High-quality	High-quality	96.890	AAI-based (high-confidence)	Hollowayvirus	Hollowayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_10
PP735124	Salmonella phage SCF	108556	39.019	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis ATCC 13076	High-quality	High-quality	96.060	AAI-based (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic