INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PP754930	Porphyromonas phage phage010a_HG1691old	33222	53.561	Porphyromonas	Group I	Honmavirus	Honmavirus	Unclassified	Alisviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Porphyromonas gingivalis HG1691old	Medium-quality	Genome-fragment	77.570	AAI-based (medium-confidence)	Honmavirus	Honmavirus pging00E	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP754929	Porphyromonas phage phage007a_Bg4	35050	53.695	Porphyromonas	Group I	Honmavirus	Honmavirus	Unclassified	Alisviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Porphyromonas gingivalis Bg4	Medium-quality	Genome-fragment	81.830	AAI-based (high-confidence)	Honmavirus	Honmavirus pging00C	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP754928	Porphyromonas phage phage005b_ATCC49417	48681	48.606	Porphyromonas	Group I	Ludisvirus	Ludisvirus	Unclassified	Ludisviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Porphyromonas gingivalis ATCC 49417	High-quality	High-quality	96.890	AAI-based (high-confidence)	Ludisvirus	Ludisvirus pging00A	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;antirepressor orf_43
PP754850	Rhodobacter phage Ebor	6611	60.672	Rhodobacter	Group II	Pentonivirus	Pentonivirus	Unclassified	Tainaviridae	Secretvirales	Microviricetes	Phixviricota	Sangervirae	Floreoviria	Rhodobacter capsulatus SB 1003	High-quality	High-quality	100.000	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PP754824	Escherichia phage J24	42515	43.876	Escherichia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (medium-confidence)	Rtpvirus	Rtpvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PP750967	Mycobacterium phage BobbyK	70887	68.835	Mycobacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coopervirus	Coopervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP750966	Mycobacterium phage Pharb	60827	67.299	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.470	AAI-based (high-confidence)	Keshuvirus	Keshuvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_38;immunity orf_41
PP750965	Microbacterium phage Crisis	52987	68.892	Microbacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL-24224	High-quality	High-quality	98.670	AAI-based (high-confidence)	Quhwahvirus	Quhwahvirus kaihaidragon	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP750964	Mycobacterium Phage BigBubba	75006	62.776	Mycobacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.530	AAI-based (high-confidence)	Kostyavirus	Kostyavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_52;immunity orf_55
PP750963	Mycobacterium phage Stank	75925	62.882	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.740	AAI-based (high-confidence)	Kostyavirus	Kostyavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_55;immunity orf_58