Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP836137Pseudomonas phage GEC_PNG143806864.067PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa 573High-qualityHigh-quality99.330AAI-based (high-confidence) CasadabanvirusCasadabanvirus JD024Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperatecro orf_1
PP836136Pseudomonas phage GEC_PNG39363649.305PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa 573CompleteHigh-quality100.000DTR (high-confidence) PakpunavirusPakpunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP836135Pseudomonas phage GEC_MRC9399049.362PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa 573CompleteHigh-quality100.000DTR (high-confidence) PakpunavirusPakpunavirus jsCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP836134Pseudomonas phage GEC_K24276953.691PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas aeruginosa 573High-qualityHigh-quality99.890AAI-based (high-confidence) SeptimatrevirusSeptimatrevirus kakheti25Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP834370Vibrio phage vB_VpP_34245949.158VibrioGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio parahaemolyticus ATCC 33847High-qualityHigh-quality97.890AAI-based (high-confidence) MaculvirusMaculvirus MGD1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP826938Acinetobacter phage PA1034522537.815AcinetobacterGroup I ObolenskvirusObolenskvirusUnclassifiedHirszfeldviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter baumanniiCompleteHigh-quality100.000DTR (high-confidence) ObolenskvirusObolenskvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP824815Klebsiella phage DP014621048.370KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality98.140AAI-based (high-confidence) RoufvirusRoufvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP819608Bacillus phage Adastra13630640.316BacillusGroup I OkubovirusOkubovirusSpounavirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Bacillus subtilis CU 1065High-qualityHigh-quality93.130AAI-based (high-confidence) OkubovirusOkubovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP818812Actinobacillus phage vB_Apl-pPE44750848.785ActinobacillusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Actinobacillus pleuropneumoniaeHigh-qualityHigh-quality90.850AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_68
PP816325Xylella phage MATE26369552.149XylellaGroup I CarpasinavirusCarpasinavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Xylella fastidiosa A0PT1High-qualityHigh-quality100.000AAI-based (high-confidence) CarpasinavirusCarpasinavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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