Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP978825Rhodococcus phage Tonitrus5797168.957RhodococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Rhodococcus equi NRRL B-16538Medium-qualityGenome-fragment85.470AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PP978824Microbacterium phage Bush3887968.037MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality100.000AAI-based (high-confidence) AppavirusAppavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_9
PP978823Streptomyces phage Paolo5158067.402StreptomycesUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Streptomyces baarnensis NRRL B-2842High-qualityHigh-quality100.000AAI-based (high-confidence) SalutenavirusSalutenavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_29;integrase orf_52
PP978822Arthrobacter phage Swim2056859.223ArthrobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Arthrobacter globiformis B-2979High-qualityHigh-quality100.000AAI-based (high-confidence) AnjalivirusAnjalivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP978821Microbacterium phage OldNelly4160263.555MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality100.000AAI-based (high-confidence) IlzatvirusIlzatvirus teaganCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP978820Rhodococcus phage Madraxi6406466.198RhodococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Rhodococcus equi NRRL B-16538High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_54
PP978819Gordonia phage Capybara5985551.130GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia terrae 3612High-qualityHigh-quality98.800AAI-based (high-confidence) TanisvirusTanisvirus tanisCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP978818Microbacterium phage GreenIvy4025463.961MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality99.230AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PP978817Microbacterium phage Asta4155563.391MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality100.000AAI-based (high-confidence) IlzatvirusIlzatvirus ilzatCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP978816Microbacterium phage Charbie1742868.706MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality100.000AAI-based (high-confidence) PaopuvirusPaopuvirus ScamanderCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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